WormBase Model:2 point data

WormBase Models

Model

?2_point_data   Evidence #Evidence
		Genotype  UNIQUE Text
		Results  UNIQUE Text
		Experiment	Mapper ?Author
				Laboratory ?Laboratory
				Date  UNIQUE DateType
				Temperature UNIQUE Text
		Point_1 UNIQUE Gene_1   UNIQUE ?Gene  XREF 2_point UNIQUE ?Variation XREF In_2_point
			       Locus_1	UNIQUE ?Locus XREF 2_point UNIQUE ?Variation XREF In_2_point
			       Allele_1 UNIQUE ?Variation XREF 2_point
			       Rearrangement_1 UNIQUE ?Rearrangement XREF 2_point
                               Transgene_1 UNIQUE ?Transgene XREF 2_point
		Point_2 UNIQUE Gene_2   UNIQUE ?Gene  XREF 2_point UNIQUE ?Variation XREF In_2_point
			       Locus_2	UNIQUE ?Locus XREF 2_point UNIQUE ?Variation XREF In_2_point
			       Allele_2 UNIQUE ?Variation XREF 2_point
			       Rearrangement_2 UNIQUE ?Rearrangement XREF 2_point
                               Transgene_2 UNIQUE ?Transgene XREF 2_point
			// Point_1 and Point_2 are tag2 for the mapped loci
			// for now to use this on a map both must be on it with Position type Map info.
		Calculation UNIQUE Full UNIQUE Int UNIQUE Int UNIQUE Int UNIQUE Int // WT X Y XY
				   One_recombinant UNIQUE Int UNIQUE Int // WT X
				   Selected UNIQUE Int UNIQUE Int // X XY
				   One_all UNIQUE Int UNIQUE Int // X ALL
				   Recs_all UNIQUE Int UNIQUE Int UNIQUE Int UNIQUE Int // X Y ALL
				   One_let UNIQUE Int UNIQUE Int // X ALL
				   Tested UNIQUE Int UNIQUE Int // X H
				   Selected_trans UNIQUE Int UNIQUE Int // X XY
				   Backcross UNIQUE Int UNIQUE Int UNIQUE Int UNIQUE Int // WT X Y XY
				   Back_one UNIQUE Int UNIQUE Int // WT X
				   Sex_full UNIQUE Int UNIQUE Int UNIQUE Int UNIQUE Int // WT X Y XY
				   Sex_one UNIQUE Int UNIQUE Int // WT X
				   Sex_cis UNIQUE Int UNIQUE Int // X ALL
				   Dom_one UNIQUE Int UNIQUE Int // WT nonWT
				   Dom_selected UNIQUE Int UNIQUE Int // WT X
				   Dom_semi UNIQUE Int UNIQUE Int // XD ALL
				   Dom_let UNIQUE Int UNIQUE Int // WT ALL
				   Direct UNIQUE Int UNIQUE Int // R T
				   Complex_mixed UNIQUE Int UNIQUE Int // X ALL
			// calculation fields can be used for full likelihood calculations
		Calc  Calc_distance UNIQUE Float
		      Calc_lower_conf UNIQUE Float
		      Calc_upper_conf UNIQUE Float
			// these fields are filled in by software from the Calculation data
	        Simple_distance	Min      UNIQUE Float 
                                Distance UNIQUE Float
                                Max      UNIQUE Float
                                Error    UNIQUE Float
                                Linkage  UNIQUE Text
			// some of these are used for drawing in the absence of Calculation data
		Remark ?Text #Evidence
	// code uses Point_1, Point_2, Calculation and all its subtags, all the Calc subtags,
	// and most of the Simple_distance subtags.

Proposed changes

Unused tags

Transgene_1

Locus_2

Transgene_2

Linkage