Meloidogyne javanica
BioProject PRJNA340324 | Data Source University of Hull | Taxonomy ID 6303
About Meloidogyne javanica
Meloidogyne javanica is a root-knot nematode and a major agricultural pest. It is found in tropical regions.
There is 1 alternative genome project for Meloidogyne javanica available in WormBase ParaSite: PRJEB8714
Genome Assembly & Annotation
Assembly
The assembly was produced using Illumina reads, as described in Szitenberg et al. (2017)
Annotation
The annotation was produced using AUGUSTUS. WormBase obtained it from the authors' GitHub repository.
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Key Publications
- Szitenberg A, Salazar-Jaramillo L, Blok VC, Laetsch DR, Joseph S, Williamson VM, Blaxter ML, Lunt DH. Comparative Genomics of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, and Dynamic Genome Change. Genome Biol Evol, 2017;9(10):2844-2861
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Assembly Statistics
| Assembly | ASM369362v1, GCA_003693625.1 |
| Strain | VW4 |
| Database Version | WBPS19 |
| Genome Size | 150,345,270 |
| Data Source | University of Hull |
| Annotation Version | 2019-01-WormBase |
Gene counts
| Coding genes | 24,679 |
| Pseudogenes | 944 |
| Gene transcripts | 25,623 |
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