Ditylenchus dipsaci

Genome Assembly & Annotation

Assembly

The genome was sequenced using PacBio long reads and assembled with Canu, as described in Mimee et al (2019) .

Annotation

Annotation was submitted to WormBase in May 2019 by Rick Masonbrink.

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Mimee B, Lord E, Véronneau PY, Masonbrink R, Yu Q, Akker SED. The draft genome of <i>Ditylenchus dipsaci</i>. J Nematol, 2019;51():1-3

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression