a JavaScript DNA, RNA, and protein sequence viewer

Software for prediction of plasmid sequences in metagenomic assemblies

Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)

This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir

An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.

Predict plasmids from uncorrected long read data

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

PLSDB pipeline to collect bacterial plasmids from NCBI

code repo for mobileOG-db

repository-based plasmid design

A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes

Finding regions of similarity between plasmids

DEPRECATED: Use Cenote-Taker 3 instead

A library for creating plasmid feature maps with zero external dependencies.

Visual plasmid sketcher

Automatically plan the most optimal expression vector using restriction enzymes.

A collection of bioinformatics tools for use with galaxy written at Quadram Institute

Plasmid Designer and DNA Editor

A simple SVG drawer for plasmid map diagram.

A tool to batch-generate optimal DNA primers for Sanger sequencing. Output .xlsx file is directly compatible with IDT Oligo Entry.