Benchmarking several NVIDIA GPUs with dorado

A tool for quality overview of long-read sequencing data

antibiotic resistance profiling of nanopore reads

Intellia's Clone of rrwick/Porechop

Benchmark analysis of algorithms for determining full-length mRNA isoforms by Nanopore RNA-seq data.

Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022

Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.

Nextflow script for nanopore base calling with albacore

snakemake pipeline based on nanopolish

Utility addon for https://github.com/parkin/pypore

Pipeline with GUI for nanopore-sequencing.

PathoPore - Longer Sequences and NextFlow Faster Analysis

Data manipulating methodologies using multiple Bioinformatics Tools

😎 This repository contains scripts that I wrote for data analysis and visualization.

Bioinformatic pipeline for SARS-CoV-2 sequence analysis

Tool to analyze chromatin accessibility with long read sequencing technologies

Finalised PDF Files

Assembly of chloroplast genome using long-reads and short-reads for Genomics Course 2021 (MSc Bioinformatics for Computational Genomics)

2023_London_Calling_Poster

Project 2 from SC2 @ FUB - Snakemake implementation to compare Illumina and Nanopore sequence assembly quality of the same sample.