FEELnc : FlExible Extraction of LncRNA

An attempt to help anyone interested in using Perl for Bioinformatics

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

An R package for automatically aggregating and summarizing lncRNA analysis results.

Statistical and computational analysis of the human genome

LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network

Pipeline for lncRNA, Circular RNA, and novel mRNA identification.

PATO: high PerformAnce TriplexatOr is a high performance tool for the fast and efficient detection of triple helices and triplex features in nucleotide sequences

Automated RNA-seq pipeline for lncRNA indentification

lncRNA分析流程

A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)

Snakemake pipeline for lncRNA discovery and quantification

BioSeq2vec: learning deep representation of biological sequences using LSTM Encoder-Decoder

LncDC: a machine-learning based tool for long non-coding RNA detection from RNA-Seq data

Pipeline for the unsupervised clustering of homologous RNA structure motifs from sequencing data.

MSLCRN: a novel step-wise method for inferring module-specific lncRNA-mRNA causal regulatory network in human cancer

Collaboration with Luigi Marchionni (JHU) and RIKEN with recount2 data

Nextflow pipeline to combine nanoseq and ANNEXA for long-read RNASeq data

ncRNA identification, annotation and functional prediction