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Commits on Nov 17, 2024

• Add test for breakend detection

  pd3

  committed
  a5bc0ea

Commits on Nov 16, 2024

• Fix a bug in genotype filtering

  pd3

  committed
  f602523

Commits on Oct 31, 2024

• Switch MacOS CI build to sonoma

  

  daviesrob

  authored and

  pd3

  committed
  5d57c7b

• Use --enable-libgsl --enable-perl-filters when testing

  

  daviesrob

  authored and

  pd3

  committed
  ac15fea

• Fix "may be used uninitialized" warnings at low optimisation

  

  daviesrob

  authored and

  pd3

  committed
  8310af3

• Remove unused variables, spotted by clang

  

  daviesrob

  authored and

  pd3

  committed
  fcdae25

• Complain if Number=R,A assumptions not met

  pd3

  committed
  825a5dc

Commits on Oct 26, 2024

• Merge branch 'develop' of pd3-github:samtools/bcftools into develop

  pd3

  committed
  c46a8ef

• Support for setting missing genotypes with arbitrary ploidy

  pd3

  committed
  0148624

Commits on Oct 22, 2024

• Fix gmake 4.4 "pattern recipe did not update peer target" warnings

  

  daviesrob

  authored and

  pd3

  committed
  4f8bf53

• Update documentation

  pd3

  committed
  4735097

• Add support for matching VCF lines by ID

  pd3

  committed
  3d994d3

Commits on Oct 21, 2024

• Replace AppVeyor for GitHub Actions workflow for Windows builds

  

  jkbonfield

  authored and

  daviesrob

  committed
  a79ca97

• Improve cirrus-CI for shared htslib/bcftools PRs.

  

  jkbonfield

  authored and

  daviesrob

  committed
  a781f5b

Commits on Oct 14, 2024

• Print header for debugging output with -vvv and warn when -i is not used

  pd3

  committed
  4dd56e3

Commits on Oct 10, 2024

• Stop referring to -d none by the documentation

  pd3

  committed
  e60c622

Commits on Oct 3, 2024

• Fix cut and paste errors in writing the get_data.sh script.

  

  jkbonfield

  authored and

  pd3

  committed
  191c665

• Second attempt to enable indexing from vcf.

  

  whitwham

  authored and

  pd3

  committed
  416eae1

Commits on Oct 2, 2024

• Update NEWS

  pd3

  committed
  ef8b974

• Merge branch 'bt-2271-query-expr' into develop

  pd3

  committed
  c6cbcc7

• Add support for -i/-e filtering functions

  pd3

  committed
  6be9e81

Commits on Sep 16, 2024

• [MINOR] update NEWS and usage page

  pd3

  committed
  9d31418

• Update NEWS and man page

  pd3

  committed
  5e585b3

• Merge noise-profile

  pd3

  committed
  8a51761

Commits on Sep 12, 2024

• Merge version number bump and NEWS file from master

  daviesrob

  committed
  35f3af4

• Release 1.21

  daviesrob

  committed
  bcf6c62

Commits on Sep 11, 2024

• Work around an incompatibility between Perl and clang warnings.

  

  jkbonfield

  authored and

  pd3

  committed
  b411171

Commits on Sep 10, 2024

• Initial commmit, support for -i/-e functions (such as mean) in query format output

  pd3

  committed
  5852c81

Commits on Sep 9, 2024

• Do not require -s - when there were no samples in the VCF

  pd3

  committed
  17b6563

• Reapply previous Makefile dependency fix

  

  jmarshall

  authored and

  pd3

  committed
  8d62697

• Make empty region list result in empty VCF

  pd3

  committed
  fdac1d4

Commits on Sep 6, 2024

• Resolve merge conflicts

  pd3

  committed
  4cc4f0e

• Add another test

  pd3

  committed
  407c0fc

• Follow the recommended order of operations

  pd3

  committed
  ca6ebec

• Fix a regression with -Ou format being the same as -Ob.

  

  jkbonfield

  authored and

  pd3

  committed
  deba4d8

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