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rba_reactome_diseases.Rd
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rba_reactome_diseases.Rd
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/reactome_content.R
\name{rba_reactome_diseases}
\alias{rba_reactome_diseases}
\title{Reactome Diseases}
\usage{
rba_reactome_diseases(doid = FALSE, ...)
}
\arguments{
\item{doid}{(logical) Return disease DOIDs instead of diseases?
(default = FALSE)}
\item{...}{rbioapi option(s). See \code{\link{rba_options}}'s
arguments manual for more information on available options.}
}
\value{
Data frame containing all the disease annotation available at
Reactome. If doid was set to TRUE, DOID info will be returned instead.
}
\description{
This function Retrieve a list of all diseases or disease DOIDs annotated in
Reactome.
}
\section{Corresponding API Resources}{
"GET https://reactome.org/ContentService/data/diseases"
\cr "GET https://reactome.org/ContentService/data/diseases/doid"
}
\examples{
\donttest{
rba_reactome_diseases()
}
\donttest{
rba_reactome_diseases(doid = TRUE)
}
}
\references{
\itemize{
\item Marc Gillespie, Bijay Jassal, Ralf Stephan, Marija Milacic, Karen
Rothfels, Andrea Senff-Ribeiro, Johannes Griss, Cristoffer Sevilla, Lisa
Matthews, Chuqiao Gong, Chuan Deng, Thawfeek Varusai, Eliot Ragueneau,
Yusra Haider, Bruce May, Veronica Shamovsky, Joel Weiser, Timothy Brunson,
Nasim Sanati, Liam Beckman, Xiang Shao, Antonio Fabregat, Konstantinos
Sidiropoulos, Julieth Murillo, Guilherme Viteri, Justin Cook, Solomon
Shorser, Gary Bader, Emek Demir, Chris Sander, Robin Haw, Guanming Wu,
Lincoln Stein, Henning Hermjakob, Peter D’Eustachio, The reactome
pathway knowledgebase 2022, Nucleic Acids Research, 2021;, kab1028,
https://doi.org/10.1093/nar/gkab1028
\item Griss J, Viteri G, Sidiropoulos K, Nguyen V, Fabregat A,
Hermjakob H. ReactomeGSA - Efficient Multi-Omics Comparative Pathway
Analysis. Mol Cell Proteomics. 2020 Sep 9. doi: 10.1074/mcp. PubMed
PMID: 32907876.
\item \href{https://reactome.org/ContentService/}{Reactome Content
Services API Documentation}
\item \href{https://reactome.org/cite/}{Citations note on Reactome website}
}
}
\concept{"Reactome Content Service - Disease Related Queries"}