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Commits on Aug 22, 2019

• provide hotspot3d webservice

  Beifang

  committed
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Commits on Jul 31, 2019

• Update README.md

  shoy91

  authored
  435e4ce

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Commits on Sep 11, 2018

• Merge pull request #22 from niu-lab/master

  Show description for 3f8623c
  Beifang

  authored
  3f8623c

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• add email for user response

  Beifang

  committed
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Commits on Aug 22, 2018

• Adding citation info to the README

  amilacsw

  committed
  62b1c42

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Commits on Apr 11, 2018

• updating contact info, and making recurrence as the default vertex type

  amilacsw

  committed
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Commits on Dec 14, 2017

• Merge branch 'license'

  AdamDS

  committed
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• Adding info to the error msg about how to fix get() bug

  amilacsw

  committed
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Commits on Dec 13, 2017

• Fixing the Archive Extract constructor bug

  amilacsw

  committed
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Commits on Dec 9, 2017

• license from MIT to GPL-3.0

  AdamDS

  committed
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Commits on Dec 5, 2017

• fixing drug related bugs

  amilacsw

  committed
  cf2dcd1

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• Fixing the bug which caused prep to filter out drugs

  amilacsw

  committed
  8de6b5b

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• Fixing a bug which caused prep to filter out all the drugs

  amilacsw

  committed
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Commits on Oct 17, 2017

• bug fix with not opening drug target and nontarget files to write

  amilacsw

  committed
  4532d89

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• clarified amino acid conversion method and use

  AdamDS

  committed
  2f97288

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• calpro calculates distances for drugs, small molecules, and amino acids but skips water.

  AdamDS

  committed
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Commits on Oct 6, 2017

• Performance update by changing the vertex filter method used in SITE and Density

  amilacsw

  committed
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• Performance update by changing the vertex filter used in SITE and Density

  amilacsw

  committed
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Commits on Oct 4, 2017

• filtering vertices by UniProtID and changing the help text

  amilacsw

  committed
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• filtering vertices by UniProtID and changing the help text

  amilacsw

  committed
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• filtering vertices by UniProtID

  amilacsw

  committed
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Commits on Sep 30, 2017

• Merge branches 'rescore' and 'densityRec' of https://github.com/ding-lab/hotspot3d

  AdamDS

  committed
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• script adds random weights to a .maf; used in demo weight example

  AdamDS

  committed
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• removed prior build

  AdamDS

  committed
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• cleaned centroid determination to work for both recurrence and weight clustering

  AdamDS

  committed
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Commits on Sep 29, 2017

• demo contains results to compare network recurrence and weight clustering

  AdamDS

  committed
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Commits on Sep 28, 2017

• Adding recurrence and weight based clustering to the Density Module

  amilacsw

  committed
  6bf3a23

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• demo expected clusters and summary for new exponentials scoring

  AdamDS

  committed
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• code cleaning for exponentials scoring. fixed determining centroids for new subclusters.

  AdamDS

  committed
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Commits on Sep 27, 2017

• exponentials weight coefficient to wi. exponentials centroids chosen by score magnitude.

  AdamDS

  committed
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• rebuild 1.8.0 for exponentials coefficient change

  AdamDS

  committed
  f4e4dfb

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• updated Demo expected results for exponentials coefficient change

  AdamDS

  committed
  403ceb7

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• changed exponentials scoring to wi+W+1 exp

  AdamDS

  committed
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Commits on Sep 26, 2017

• new tarball build for 1.8.0

  AdamDS

  committed
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• added expected data for custom weight runs using exponentials score

  AdamDS

  committed
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