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43 Open 97 Closed
43 Open 97 Closed
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Issues list

Will polishing alter the phased genome information? Do you have any suggestions?
#141 opened Nov 27, 2024 by YouxinZhao
polish for scaffod.fa(contain Ns)
#139 opened Oct 2, 2024 by DayTimeMouse
NextPolish for metagenome?
#138 opened Sep 14, 2024 by 123chenshixin
1
After I run nextPolish run.cfg, the NextPolish vanished and generate a copy
#135 opened Aug 28, 2024 by SoSongzhi
2
The telemore sequences were removed after Nextpolish
#134 opened Jul 28, 2024 by YouxinZhao
1
An error message was encountered while running 00.lgs_polish/04.polish.ref.sh.work/polish_genome01
#132 opened Apr 23, 2024 by jiuyaojiaonini
The process of polishing causes a significant decrease in genome size.
#130 opened Apr 11, 2024 by xujialupaoli
11
problem with NextPolish-CentOS6.9.tgz
#129 opened Mar 21, 2024 by zhengyanstu
polish_genome failed
#128 opened Mar 15, 2024 by liuyca1
1
[main_samview] fail to read the header from "-"
#126 opened Dec 26, 2023 by kishor2019
1
run fails with long read only in conda env
#124 opened Nov 8, 2023 by splaisan
5
make[2]: *** [Makefile:30: bwa] Error 1 错误
#121 opened Oct 22, 2023 by smoothyly
1
db_split failed:
#119 opened Aug 16, 2023 by YDD99
4
Test run failed at map_genome: "[gzclose] buffer error"
#117 opened Jul 26, 2023 by jmpolinski
3
Ignore the secondary alignment
#116 opened Jul 21, 2023 by lilinzhou
2
Empty bin directory after installation?
#112 opened May 8, 2023 by JolandadeB
2
repeat regions
#111 opened Mar 22, 2023 by cfz1998
5
nextpolish2.py never stop
#108 opened Feb 27, 2023 by yangfangyuan0102
6
Using Illumina Hi-C and Chicago data?
#104 opened Feb 5, 2023 by 000generic
4
Polish with raw or corrected ONT reads?
#102 opened Oct 22, 2022 by tbrown91
1
how to deal with "N"
#101 opened Oct 21, 2022 by LINGLIU18
1
Why there is no stats about changes when polished with nextpolish1.py or nextpolish2.py
#99 opened Aug 4, 2022 by MongXR
1
Polish only INDELs or only SNPs, and polishing thresholds
#95 opened Jun 13, 2022 by mmontonerin
1
slurm_submit_batch_job error
#92 opened Apr 24, 2022 by scylaz
1
How long and how much memory should NextPolish require?
#90 opened Mar 15, 2022 by kcl58759
4
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