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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 236 79

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    17 8

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 217 108

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 203 46

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 300 repositories
  • sll_vr_reporting_utils Public

    Scripts used to dig out the data needed for the SciLifeLab and VR yearly reports.

    NBISweden/sll_vr_reporting_utils’s past year of commit activity
    Python 0 1 0 0 Updated Dec 11, 2024
  • assembly-project-template Public template

    This is a template for all assembly projects. Please read the instructions below on how to use it.

    NBISweden/assembly-project-template’s past year of commit activity
    Shell 3 MIT 1 1 1 Updated Dec 11, 2024
  • AGAT Public

    Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

    NBISweden/AGAT’s past year of commit activity
    Perl 470 GPL-3.0 57 18 (1 issue needs help) 0 Updated Dec 11, 2024
  • sda-services-backup Public
    NBISweden/sda-services-backup’s past year of commit activity
    Go 2 1 1 0 Updated Dec 11, 2024
  • workshop-epigenomics-RTDs Public

    workshop website on readthedocs

    NBISweden/workshop-epigenomics-RTDs’s past year of commit activity
    19 13 0 0 Updated Dec 9, 2024
  • sda-uppmax-integration Public
    NBISweden/sda-uppmax-integration’s past year of commit activity
    Go 0 0 1 0 Updated Dec 9, 2024
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 44 1 Updated Dec 9, 2024
  • copilot_proxy_demo Public

    A demo repo to show what Copilot sends to GitHub.

    NBISweden/copilot_proxy_demo’s past year of commit activity
    Python 1 0 0 0 Updated Dec 6, 2024
  • sbpda Public

    This repository is public repo to share the scripts/workflows related to Spatial Biology & NBIS platforms collaborations

    NBISweden/sbpda’s past year of commit activity
    Python 0 0 3 0 Updated Dec 5, 2024
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    NBISweden/data-submission-documentation’s past year of commit activity
    Python 3 0 0 1 Updated Dec 5, 2024
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