Skip to content

Issues: GoekeLab/bambu

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

33 Open 163 Closed
33 Open 163 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Help replicating results from another paper
#453 opened Nov 14, 2024 by NikoLichi
3
Large numebr of BAM files leads to Error in vec_interleave_indices(): enhancement New feature or request
#450 opened Oct 17, 2024 by NikoLichi
10
BiocParallel error when using Bambu in quantification mode
#449 opened Sep 23, 2024 by apsteinberg
Merging read classes across samples results in fewer novel transcripts
#448 opened Sep 19, 2024 by apsteinberg
14
Error in xgb.get.handle(object): 'xgb.Booster' object is corrupted or is from an incompatible xgboost version.
#447 opened Sep 16, 2024 by nick-youngblut
6
Input genome file not readable => bambu does not support gzip'd input
#446 opened Sep 16, 2024 by nick-youngblut
5
read assignment information
#445 opened Sep 3, 2024 by sparthib
4
Low increase in discovered isoforms with RNA004 data
#443 opened Aug 23, 2024 by dietvin
1
Transcripts identified by Bambu have a CPM or count value of 0 in all samples
#441 opened Jul 9, 2024 by alexyfyf
2
How to improve the efficiency on a single sample?
#439 opened Jul 9, 2024 by dudududu12138
3
Fusion gene analysis?
#433 opened Jun 19, 2024 by apsteinberg
6
multiple entries with the same exon_number for a given transcript_id
#430 opened May 28, 2024 by zhangkn3
1
How to use bambu in parellel on HPC clusters?
#428 opened May 23, 2024 by dudududu12138
1
Clarification on reads argument
#425 opened Apr 27, 2024 by cjw85
2
mouse data
#424 opened Apr 11, 2024 by mocherry
1
question on multisampling
#421 opened Apr 4, 2024 by sparthib
8
recommended quality control for input BAM files
#418 opened Mar 23, 2024 by sparthib
1
Barcode demultiplexing on the long-reads alignment?
#417 opened Mar 21, 2024 by ShaowenJ
4
Errors and warnings explanation
#416 opened Mar 8, 2024 by zhangkn3
2
Interpreting warning messages in discovery only mode
#415 opened Feb 28, 2024 by sparthib
2
BiocParallel error when putting multiple .bam files as inputs for reads
#414 opened Feb 28, 2024 by TingQi2020
1
question about transcriptome/genome
#413 opened Jan 23, 2024 by huawen-poppy
2
why multiple .bam files(>=7) cannot work
#411 opened Jan 10, 2024 by Yumy526
14
singe exon transcript strand cDNA versus direct RNA nanopore protocol
#409 opened Jan 9, 2024 by tderrien
2
dplyr::summarise message
#408 opened Jan 8, 2024 by mikelove
ProTip! Add no:assignee to see everything that’s not assigned.