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Gaius-Augustus

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  1. BRAKER BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 368 81

  2. Augustus Augustus Public

    Genome annotation with AUGUSTUS

    C++ 290 110

  3. GALBA GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

    Perl 132 4

  4. TSEBRA TSEBRA Public

    Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Python 48 5

  5. Tiberius Tiberius Public

    deep learning gene finder

    Python 39 3

  6. MakeHub MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Python 34 4

Repositories

Showing 10 of 19 repositories
  • learnMSA Public

    Learning and Aligning Large Protein Families with support of protein language models.

    Gaius-Augustus/learnMSA’s past year of commit activity
    Jupyter Notebook 19 MIT 3 3 0 Updated Nov 29, 2024
  • Tiberius Public

    deep learning gene finder

    Gaius-Augustus/Tiberius’s past year of commit activity
    Python 39 MIT 3 6 0 Updated Nov 25, 2024
  • Augustus Public

    Genome annotation with AUGUSTUS

    Gaius-Augustus/Augustus’s past year of commit activity
    C++ 290 110 156 5 Updated Nov 25, 2024
  • clamsa Public Forked from liemonade/clamsa

    ClaMSA (Classify Multiple Sequence Alignments).

    Gaius-Augustus/clamsa’s past year of commit activity
    Python 11 2 4 (1 issue needs help) 0 Updated Nov 21, 2024
  • GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

    Gaius-Augustus/GALBA’s past year of commit activity
    Perl 132 4 10 1 Updated Nov 15, 2024
  • BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Gaius-Augustus/BRAKER’s past year of commit activity
    Perl 368 81 149 (3 issues need help) 1 Updated Nov 14, 2024
  • TSEBRA Public Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Gaius-Augustus/TSEBRA’s past year of commit activity
    Python 48 6 11 0 Updated Nov 13, 2024
  • MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Gaius-Augustus/MakeHub’s past year of commit activity
    Python 34 GPL-3.0 4 0 0 Updated Oct 2, 2024
  • Diatom_annotation_scripts Public

    Helper scripts to prepare a functionally decorated BRAKER output file for upload to NCBI Genomes

    Gaius-Augustus/Diatom_annotation_scripts’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 16, 2024
  • tf_tcmc Public Forked from liemonade/tf_tcmc

    Tensorflow Implementation for calculating graphical probabilistical models with edge transitions modelled by Time-reversible Continuous-time Markov Chains (TCMC).

    Gaius-Augustus/tf_tcmc’s past year of commit activity
    Python 2 1 1 0 Updated Aug 16, 2024
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