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Commits on Apr 11, 2025

• Add info on how to perform a testrun in docs

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• Merge pull request #91 from AfshinLab/add-testdata

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• Add testdata to repo (fix #90)

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Commits on Feb 13, 2025

• Merge pull request #89 from AfshinLab/fix-88

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Commits on Feb 3, 2025

• limit build until https://github.com/bioconda/bioconda-recipes/issues/53639 is fixed

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Commits on Jan 29, 2025

• Merge pull request #86 from AfshinLab/fix-85

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Commits on Jan 17, 2025

• minimum start value for defining a region is 1, see https://github.com/pysam-developers/pysam/blob/0eae5be21ac3ab3ac7aa770a3931e2977e37b909/pysam/libchtslib.pyx#L671

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Commits on Nov 21, 2024

• Merge pull request #87 from AfshinLab/ci-update

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Commits on Nov 20, 2024

• Update to latest setup-minicond version

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• Mambaforge is getting depreciated https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/

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• avoid negative start position for the region

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Commits on Sep 27, 2024

• Merge pull request #84 from AfshinLab/fix-82

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• fix broken ci linting

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• Empty Commit

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• close f-string

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Commits on Dec 8, 2023

• Update ci.yml

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• Remove validation for initializing

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• Merge pull request #66 from AfshinLab/add-manta

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Commits on Nov 20, 2023

• reduce image size

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• Update docs

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Commits on Nov 8, 2023

• remove space

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• add CITATION.cff

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Commits on Oct 11, 2023

• Merge pull request #80 from AfshinLab/update-anew

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• require genome_reference to be set

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• dont run main pipeline when doing dryrun with --anew

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• also symlink index if it exists

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• fix bam/cram handling in run_anew.smk

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Commits on Oct 2, 2023

• increase resolution further, add afdesign files

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• improve resolution

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• add logos

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• remove issues link

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Commits on Aug 23, 2023

• add manta and mtglink

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Commits on May 10, 2023

• skip deepvariant install in ci

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• update naibr to v0.4.1

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• Fix double param fields

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