WormBase — The Blog https://blog.wormbase.org The Official Blog of WormBase Thu, 21 Nov 2024 23:26:04 +0000 en-US hourly 1 https://wordpress.org/?v=6.6.2 98865909 Change in gene summaries for WS294 https://blog.wormbase.org/2024/11/21/change-in-gene-summaries-for-ws294/ https://blog.wormbase.org/2024/11/21/change-in-gene-summaries-for-ws294/#respond <![CDATA[Ranjana Kishore]]> Thu, 21 Nov 2024 23:26:03 +0000 <![CDATA[news]]> <![CDATA[release notes]]> <![CDATA[Uncategorized]]> <![CDATA[data update]]> <![CDATA[gene summaries]]> <![CDATA[WS294]]> https://blog.wormbase.org/?p=4679 <![CDATA[A gene summary is a brief description of the key functional aspects of a gene and appears in the “Overview” widget of every gene page in WormBase. Recently we changed the rules for inclusion of data such as large scale expression cluster data and protein domain data in gene summaries. When functional data as represented […]]]> <![CDATA[

A gene summary is a brief description of the key functional aspects of a gene and appears in the “Overview” widget of every gene page in WormBase. Recently we changed the rules for inclusion of data such as large scale expression cluster data and protein domain data in gene summaries. When functional data as represented by Gene Ontology (GO) process, function or cellular component annotations are available for a gene, these are used to generate a gene summary. When no GO annotations are available for a gene, then functional data from the orthologous human gene is included in the gene summary. Further, if no tissue or cellular expression is available for the gene, expression cluster and protein domain data are included in the gene summary. Please see the microPublication that describes these updates to the gene summaries for C. elegans and other nematodes in the WS294 release of WormBase.

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Two new chapters in WormBook, GENETICS! https://blog.wormbase.org/2024/10/28/two-new-chapters-in-wormbook-genetics-3/ https://blog.wormbase.org/2024/10/28/two-new-chapters-in-wormbook-genetics-3/#respond <![CDATA[Ranjana Kishore]]> Mon, 28 Oct 2024 03:55:34 +0000 <![CDATA[news]]> <![CDATA[paper of interest]]> <![CDATA[wormbook]]> <![CDATA[new chapters]]> <![CDATA[WormBook GENETICS]]> https://blog.wormbase.org/?p=4676 <![CDATA[Check out the two new chapters in WormBook, GENETICS, “Life history in Caenorhabditis elegans: from molecular genetics to evolutionary ecology” by Christian Braendle and Analise Paaby, and “Neurogenesis in Caenorhabditis elegans” by Richard Poole, Nuria Flames, Luisa Cochella.]]> <![CDATA[

Check out the two new chapters in WormBook, GENETICS, “Life history in Caenorhabditis elegans: from molecular genetics to evolutionary ecology” by Christian Braendle and Analise Paaby, and “Neurogenesis in Caenorhabditis elegans” by Richard Poole, Nuria Flames, Luisa Cochella.

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New Alliance version recently released https://blog.wormbase.org/2024/10/23/new-alliance-version-recently-released/ https://blog.wormbase.org/2024/10/23/new-alliance-version-recently-released/#respond <![CDATA[Ranjana Kishore]]> Wed, 23 Oct 2024 19:52:34 +0000 <![CDATA[new datasets]]> <![CDATA[new features]]> <![CDATA[news]]> <![CDATA[release notes]]> <![CDATA[Alliance of Genome Resources]]> <![CDATA[new release]]> https://blog.wormbase.org/?p=4674 <![CDATA[Check out the new release (version 7.4.0) of the Alliance of Genome Resources (Alliance). A notable feature of this release is that it includes ~2.5 million variants of clinical significance from ClinVar! To learn more about this release see the Release Notes.]]> <![CDATA[

Check out the new release (version 7.4.0) of the Alliance of Genome Resources (Alliance). A notable feature of this release is that it includes ~2.5 million variants of clinical significance from ClinVar! To learn more about this release see the Release Notes.

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Victor Ambros and Gary Ruvkun awarded the Nobel Prize in Physiology or Medicine https://blog.wormbase.org/2024/10/07/victor-ambros-and-gary-ruvkun-awarded-the-nobel-prize-in-physiology-or-medicine/ https://blog.wormbase.org/2024/10/07/victor-ambros-and-gary-ruvkun-awarded-the-nobel-prize-in-physiology-or-medicine/#respond <![CDATA[Todd Harris]]> Mon, 07 Oct 2024 13:38:19 +0000 <![CDATA[news]]> https://blog.wormbase.org/?p=4671 <![CDATA[Victor Ambros and Gary Ruvkun have been named the 2024 recipients of the Nobel Prize in Physiology or Medicine for their pioneering work on microRNAs. We extend our hearty congratulations to Victor and Gary for this outstanding achievement and their years of service to the C. elegans community and beyond!]]> <![CDATA[

Victor Ambros and Gary Ruvkun have been named the 2024 recipients of the Nobel Prize in Physiology or Medicine for their pioneering work on microRNAs.

We extend our hearty congratulations to Victor and Gary for this outstanding achievement and their years of service to the C. elegans community and beyond!

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New top 10 community list for ACKnowledge data https://blog.wormbase.org/2024/09/30/new-top-10-community-list-for-acknowledge-data/ https://blog.wormbase.org/2024/09/30/new-top-10-community-list-for-acknowledge-data/#respond <![CDATA[Ranjana Kishore]]> Mon, 30 Sep 2024 20:27:29 +0000 <![CDATA[community]]> <![CDATA[external website news]]> <![CDATA[news]]> <![CDATA[ACKnowledge]]> <![CDATA[community curation]]> https://blog.wormbase.org/?p=4668 <![CDATA[Thanks to all our community curators for their contributions to the ACKnowledge project! The new top 10 list is available on WormBase, check it out!]]> <![CDATA[

Thanks to all our community curators for their contributions to the ACKnowledge project! The new top 10 list is available on WormBase, check it out!

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New WormBook chapters about extracellular vesicles and the cuticle https://blog.wormbase.org/2024/08/15/new-wormbook-chapters-about-extracellular-vesicles-and-the-cuticle/ https://blog.wormbase.org/2024/08/15/new-wormbook-chapters-about-extracellular-vesicles-and-the-cuticle/#respond <![CDATA[Ranjana Kishore]]> Thu, 15 Aug 2024 03:32:00 +0000 <![CDATA[external website news]]> <![CDATA[news]]> <![CDATA[paper of interest]]> <![CDATA[wormbook]]> <![CDATA[WormBook GENETICS]]> http://blog.wormbase.org/?p=4663 <![CDATA[Check out the two new chapters in WormBook, GENETICS: Extracellular vesicles by Juan Wang, Maureen Barr, and Ann Wehman and The Caenorhabditis elegans cuticle and precuticle: a model for studying dynamic apical extracellular matrices in vivo by Meera Sundaram and Nathalie Pujol.]]> <![CDATA[

Check out the two new chapters in WormBook, GENETICS: Extracellular vesicles by Juan Wang, Maureen Barr, and Ann Wehman and The Caenorhabditis elegans cuticle and precuticle: a model for studying dynamic apical extracellular matrices in vivo by Meera Sundaram and Nathalie Pujol.

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WormBase WS293 released with balancers now available in SimpleMine https://blog.wormbase.org/2024/08/08/wormbase-ws293-released-with-balancers-now-available-in-simplemine/ https://blog.wormbase.org/2024/08/08/wormbase-ws293-released-with-balancers-now-available-in-simplemine/#respond <![CDATA[Ranjana Kishore]]> Thu, 08 Aug 2024 18:35:16 +0000 <![CDATA[new features]]> <![CDATA[news]]> <![CDATA[release notes]]> <![CDATA[new release]]> <![CDATA[SimpleMine]]> <![CDATA[WS293]]> http://blog.wormbase.org/?p=4660 <![CDATA[The WormBase website has been updated to the WS293 release (check out the release notes for details). This release features the addition of balancers to SimpleMine! Now you can find balancers and their reference strains for a list of C. elegans genes under the “Genetics, Interactions and Phenotypes” menu.]]> <![CDATA[

The WormBase website has been updated to the WS293 release (check out the release notes for details). This release features the addition of balancers to SimpleMine! Now you can find balancers and their reference strains for a list of C. elegans genes under the “Genetics, Interactions and Phenotypes” menu.

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New top 10 community curators list for ACKnowledge data https://blog.wormbase.org/2024/07/30/new-top-10-community-curators-list-for-acknowledge-data/ https://blog.wormbase.org/2024/07/30/new-top-10-community-curators-list-for-acknowledge-data/#respond <![CDATA[Ranjana Kishore]]> Tue, 30 Jul 2024 16:48:12 +0000 <![CDATA[brief communication]]> <![CDATA[community]]> <![CDATA[news]]> <![CDATA[ACKnowledge]]> <![CDATA[community curation]]> http://blog.wormbase.org/?p=4657 <![CDATA[Thanks to all our community curators for their contributions to the ACKnowledge project! The new top 10 list is available on WormBase, check it out!]]> <![CDATA[

Thanks to all our community curators for their contributions to the ACKnowledge project! The new top 10 list is available on WormBase, check it out!

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New chapter about dendrite morphogenesis in WormBook, GENETICS https://blog.wormbase.org/2024/06/18/new-chapter-about-dendrite-morphogenesis-in-wormbook-genetics/ https://blog.wormbase.org/2024/06/18/new-chapter-about-dendrite-morphogenesis-in-wormbook-genetics/#respond <![CDATA[Ranjana Kishore]]> Tue, 18 Jun 2024 23:35:18 +0000 <![CDATA[brief communication]]> <![CDATA[external website news]]> <![CDATA[news]]> <![CDATA[WormBook GENETICS]]> http://blog.wormbase.org/?p=4653 <![CDATA[Check out the new chapter–Dendrite morphogenesis in Caenorhabditis elegans by Maxwell Heiman and Hannes Bulow in WormBook, GENETICS.]]> <![CDATA[

Check out the new chapter–Dendrite morphogenesis in Caenorhabditis elegans by Maxwell Heiman and Hannes Bulow in WormBook, GENETICS.

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GENETICS issue about Knowledgebases and Databases https://blog.wormbase.org/2024/05/09/genetics-issue-about-knowledgebases-and-databases/ https://blog.wormbase.org/2024/05/09/genetics-issue-about-knowledgebases-and-databases/#respond <![CDATA[Ranjana Kishore]]> Thu, 09 May 2024 19:08:23 +0000 <![CDATA[brief communication]]> <![CDATA[Featured Papers]]> <![CDATA[news]]> <![CDATA[Alliance of Genome Resources]]> <![CDATA[updates]]> <![CDATA[wormbase]]> http://blog.wormbase.org/?p=4649 <![CDATA[Learn about the latest updates to the Alliance of Genome Resources and WormBase status and migration plans in papers published in the May issue of GENETICS!]]> <![CDATA[

Learn about the latest updates to the Alliance of Genome Resources and WormBase status and migration plans in papers published in the May issue of GENETICS!

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