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Pull requests: nf-core/modules

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Pull requests list

Allow bcftools sort to use all allocated memory
#9611 opened Dec 30, 2025 by fellen31 Loading…
17 tasks
Sawfish discover: allow genome.gclevels.mpack emission to be optional Ready for Review
#9609 opened Dec 29, 2025 by chaochaowong Loading…
12 of 14 tasks
@padraicc @chaochaowong @fellen31
2
traitar module is drafted
#9605 opened Dec 22, 2025 by brovolia Loading…
1
@brovolia
4
Small bug fix for bff
#9600 opened Dec 22, 2025 by LuisHeinzlmeier Loading…
Update vireo
#9599 opened Dec 22, 2025 by LuisHeinzlmeier Loading…
1
WIP: new module: MultiQC_SAV
#9587 opened Dec 18, 2025 by matthdsm Loading…
17 tasks
4
Add rgi/bwt
#9585 opened Dec 18, 2025 by vinisalazar Loading…
8
Capture nextclade tag version
#9584 opened Dec 18, 2025 by ammaraziz Loading…
5 tasks done
1
Fix fastANI module
#9583 opened Dec 17, 2025 by Ethan-Hetrick Loading…
10 of 17 tasks
16
Module to download CDD databases
#9582 opened Dec 17, 2025 by Ales-ibt Loading…
10 tasks done
@Ales-ibt
9
RiboCode - add error handling where the cli tool does not
#9581 opened Dec 17, 2025 by JackCurragh Loading…
9 of 17 tasks
1
rpsblast module and test
#9577 opened Dec 16, 2025 by Ales-ibt Loading…
7 tasks
@Ales-ibt
43
BiG Slice modules for nf-core
#9564 opened Dec 12, 2025 by SkyLexS Loading…
11 of 17 tasks
@SkyLexS
Fix for issue #5021 verifybamid2 module
#9563 opened Dec 12, 2025 by mmYeung Loading…
1
Add module t1k/run new module Adding a new module
#9555 opened Dec 11, 2025 by georgiakes Loading…
11 of 16 tasks
9
Update BWA_INDEX memory formula to match BWAMEM2_INDEX pattern
#9528 opened Dec 8, 2025 by Copilot AI • Draft
11 of 17 tasks
1
@edmundmiller
Add draft of FASTQ_REMOVE_ADAPTERS_AND_MERGE subworkflow with tests
#9521 opened Dec 8, 2025 by kornkv Loading…
41
bump vcf2maf to ensembl-vep=113.4 and update containers
#9515 opened Dec 6, 2025 by JustinBellavance Loading…
17 tasks
2
Assemblyscan 1.0.0
#9506 opened Dec 4, 2025 by eit-maxlcummins Loading…
10 tasks done
2
Get conda envs
#9504 opened Dec 4, 2025 by mirpedrol Loading…
update bclconvert with topic
#9494 opened Dec 2, 2025 by matthdsm Loading…
17 tasks
1
fix issue 9424: MultiQC report handling for AWS batch with S3 workDir
#9455 opened Nov 25, 2025 by SZhengP Loading…
3 of 17 tasks
1
fix: kmer env output missing when scientific notation found
#9442 opened Nov 24, 2025 by CormacKinsella Loading…
17 tasks
1
Update output paths in bases2fastq module
#9436 opened Nov 21, 2025 by lucacozzuto Loading…
6 of 16 tasks
Update fgbio/copyumifromreadname
#9373 opened Nov 10, 2025 by SPPearce • Draft
ProTip! Exclude everything labeled bug with -label:bug.