Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Phylogenetic analysis in R

LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models

Script for removing or counting invariant sites for the RAxML ascertainment bias corrections

A Modular and Web-Based Tool for Phylogenetic Analysis

Tool for estimating the Felsenstein bootstrap support of phylogenetic trees

R htmlwidget for Jellyfish

a tool for automatic construction of molecular data matrix for phylogenetic inference based on GenBank records

A comparative annotation toolkit (CAT) pipeline for 304 fly genomes.

Jellyfish plots for integrative visualization of spatio-temporal tumor evolution and clonal dynamics

Phylogenetic Inference and Data Visualization for Sequence-Based Typing Methods

An R package to prepare data for phylogenetic analysis

Genomic Epidemiology of SARS-CoV-2 in Pakistan

GRAPPA: Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms

A Framework for Large Scale Phylogenetic Analysis

Morphy releases are archived here. This project serves as the root folder for all of the source projects in Morphy.

An in vivo PRA reveals intronic motifs that combinatorially regulate splicing in a tissue-biased manner.

COEDL Summer School 2019 - Language Phylogenies Tutorial

Repositório para apresentação de código desenvolvido pelo grupo 3 para a UC Algoritmos para Análise Sequências Biológicas do Mestrado em Bioinformática, ano lectivo 23-24.

This tool provides a modular WDL-Docker-Cromwell environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data, genome assembly & profiling of the resistome, mobilome & virulome, as well as pangenome & MLST typing, BLASTn & phylogenetic analysis. It includes all required tools, enabling reproducible & scalable analysis