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corcordance fails with regions file

bugSomething isn't workingSomething isn't working

Status: Open.

#260 In nf-core/variantbenchmarking;

· kubranarci opened on Dec 9, 2025

Add unit tests and documentation to local modules and subworkflows

enhancementNew feature or requestNew feature or request

Status: Open.

#257 In nf-core/variantbenchmarking;

· kubranarci opened on Dec 1, 2025

check if BED follows standard format of 0 indexing

enhancementNew feature or requestNew feature or request

Status: Open.

#256 In nf-core/variantbenchmarking;

· kubranarci opened on Dec 1, 2025

add TP_comp for sompy

enhancementNew feature or requestNew feature or request

Status: Open.

#233 In nf-core/variantbenchmarking;

· kubranarci opened on Oct 14, 2025

concordance analysis for somatic benchmarking

enhancementNew feature or requestNew feature or request

Status: Open.

#232 In nf-core/variantbenchmarking;

· kubranarci opened on Oct 14, 2025

unexpected F1 score running somatic snv/indel variants benchmarking

bugSomething isn't workingSomething isn't working

Status: Open.

#225 In nf-core/variantbenchmarking;

· gianfilippo opened on Sep 29, 2025

Multiple truth sets within the same run

enhancementNew feature or requestNew feature or request

Status: Open.

#202 In nf-core/variantbenchmarking;

· fellen31 opened on Jun 5, 2025

add vcfdist tool for benchmarking

enhancementNew feature or requestNew feature or request

Status: Open.

#199 In nf-core/variantbenchmarking;

· kubranarci opened on Jun 3, 2025

regions.csv file is not being merged

bugSomething isn't workingSomething isn't working

Status: Open.

#187 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 17, 2025

SEQC2 test fails for rtgtools as malformatted INFO field in the truth

bugSomething isn't workingSomething isn't working

Status: Open.

#186 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 17, 2025

igv-reports

backlog

enhancementNew feature or requestNew feature or request

wontfixThis will not be worked onThis will not be worked on

Status: Open.

#184 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 16, 2025

add total stats for happy merging snps and indels

backlog

enhancementNew feature or requestNew feature or request

Status: Open.

#183 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 16, 2025