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Keep Learning .....
:octocat:
Keep Learning .....
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Achievement: Pull Shark

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Achievement: Pull Shark

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Ajaingithub/README.md

💫 About Me:


👋 Hi, I’m Abhinav Jain, currently working as a Computational Biologist in VoyantBio, research collaborator in UCSF & Mayo Clinic
👀 I work on single cell (RNA, ATAC, Multiome, CITESeq, ADT, TCR, Antigen, BEAM-T), spatial, bulk (WES, WGS, RNA, ATAC) and multiomics datasets including lineage Tracing in medulloblastoma and immune related disorders.
🌱 I’m currently using R, Python, Nextflow, Docker, Singularity, and Bash/Shell scripting.
💞️ I’m looking to collaborate in cancer, immunology, autoimmune disorders, immune aging, SARS-CoV-2, population genomics, and rare disease projects as well as machine learning and deep learning modelling.
📫 How to reach me [email protected].

🌐 Socials:

LinkedIn X

💻 Tech Stack:

R Python Shell Script Markdown Anaconda Adobe Illustrator Keras Matplotlib NumPy Pandas Plotly PyTorch scikit-learn Scipy TensorFlow Git GitHub Docker

📊 GitHub Stats:



✍️ Random Dev Quote

🔝 Top Contributed Repo

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  1. RShiny_CoV2 RShiny_CoV2 Public

    Develop the RShiny Web Database for scCITESeq in Aging

    R

  2. scCITESeq_pipeline scCITESeq_pipeline Public

    Batch and Modality Integration of single cell CITEseq dataset

    R 1

  3. scTCRseq scTCRseq Public

    TCR Downstream analysis clonal sharing, diversity, and clonality

    R

  4. Dockers-Nextflow Dockers-Nextflow Public

    Docker Containers

    Dockerfile

  5. DNA-Language-Model DNA-Language-Model Public

    Fine tuning the DNA language model i.e. Nucloetide Transformers to identify the promotor and enhancer region, Variant effect prediction, GWAS, Transcription factor binding, Epigenetic marks predict…

    Jupyter Notebook

  6. scRNA_Agent scRNA_Agent Public

    Developing a scRNA agent that can perform data curation -> download -> preprocessing -> differential -> plots.

    Jupyter Notebook