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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

  committed
  56e81e6

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• setting default log level to warn

  andreasprlic

  committed
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Commits on Aug 8, 2016

• new utility classes to detect if a Group is polymeric, an amino acid, or a nucleotide group.

  andreasprlic

  committed
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Commits on Jun 15, 2016

• Merge branch 'master' of github.com:biojava/biojava

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  andreasprlic

  committed
  ea722c2

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• some formatting improvements.

  andreasprlic

  committed
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• [maven-release-plugin]prepare for next development iteration

  

  Jenkins

  committed
  34b2bf9

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• [maven-release-plugin]prepare release biojava-5.0.0-alpha4

  

  Jenkins

  committed
  de01d08

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• Merge branch 'bugfixes-4.2'

  sbliven

  committed
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• [maven-release-plugin]prepare for next development iteration

  

  Jenkins

  committed
  62926e6

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• [maven-release-plugin]prepare release biojava-4.2.2

  

  Jenkins

  committed
  a74758c

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• [maven-release-plugin] rollback the release of biojava-4.2.2

  

  Jenkins

  committed
  ebacfd7

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• [maven-release-plugin]prepare for next development iteration

  

  Jenkins

  committed
  f12dad9

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• [maven-release-plugin]prepare release biojava-4.2.2

  

  Jenkins

  committed
  1dfb457

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• [maven-release-plugin] rollback the release of biojava-4.2.2

  

  Jenkins

  committed
  1648288

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• [maven-release-plugin]prepare release biojava-4.2.2

  

  Jenkins

  committed
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Commits on Jun 14, 2016

• merging in latest ptm modifications from master branch

  pwrose

  committed
  8b08584

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• Updating ptm list.

  pwrose

  committed
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• Added list of chromophores to ptm_list.xml file, updated unit tests

  pwrose

  committed
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Commits on Jun 10, 2016

• Reverting some changes to be compliant with the "old" way of doing chain IDs.

  andreasprlic

  committed
  cba1ca2

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• Merge pull request #502 from andreasprlic/master

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  josemduarte

  authored
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• merging in updated ptm_list.xml

  andreasprlic

  committed
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• merging in updated ptm_list.xml

  andreasprlic

  committed
  de6d033

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• merging in updated ptm_list.xml

  andreasprlic

  committed
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• distance have to be looked up by element name, not atom name

  andreasprlic

  committed
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• Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids.

  andreasprlic

  committed
  f8ac919

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• merging in fixes related to PTMs into bug fix branch

  andreasprlic

  committed
  849001f

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• update for 2VH3 TY2

  andreasprlic

  committed
  58c6743

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• updating legacy chemical component and atom names to current naming conventions.

  andreasprlic

  committed
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• distance have to be looked up by element name, not atom name

  andreasprlic

  committed
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Commits on Jun 9, 2016

• Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids.

  andreasprlic

  committed
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Commits on Jun 5, 2016

• squid:S2131 - Primitives should not be boxed just for String conversion

  

  Mohamed Ezzat

  committed
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Commits on Jun 1, 2016

• Allowing detection of PTMs that interact with Terbium, as reported by @epeisach . Also less verbose PTM junit test.

  andreasprlic

  committed
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Commits on May 17, 2016

• Updating change log in PTM definitions file to reflect most recent changes.

  andreasprlic

  committed
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Commits on May 12, 2016

• Merge pull request #479 from josemduarte/asymChainIds

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  andreasprlic

  committed
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Commits on May 11, 2016

• Fixed modfinder tests

  josemduarte

  committed
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