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‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/StructureToolsTest.java‎

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import org.biojava.nbio.structure.chem.DownloadChemCompProvider;
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import org.biojava.nbio.structure.io.FileParsingParameters;
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import org.biojava.nbio.structure.io.PDBFileParser;
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import org.biojava.nbio.structure.io.StructureFiletype;
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import org.junit.Before;
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import org.junit.Test;
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‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/Test1o2f.java‎

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import org.biojava.nbio.structure.Chain;
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import org.biojava.nbio.structure.Structure;
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import org.biojava.nbio.structure.StructureFiletype;
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import org.biojava.nbio.structure.io.StructureFiletype;
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import org.biojava.nbio.structure.StructureIO;
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import org.biojava.nbio.structure.align.util.AtomCache;
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import org.biojava.nbio.structure.io.LocalPDBDirectory.FetchBehavior;

‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/io/TestAtomCachePerformance.java‎

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import org.biojava.nbio.structure.Structure;
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import org.biojava.nbio.structure.StructureException;
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import org.biojava.nbio.structure.StructureFiletype;
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import org.biojava.nbio.structure.io.StructureFiletype;
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import org.biojava.nbio.structure.align.util.AtomCache;
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import org.biojava.nbio.structure.io.LocalPDBDirectory.FetchBehavior;
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import org.junit.BeforeClass;

‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/io/TestBioassemblies.java‎

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import org.biojava.nbio.structure.Chain;
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import org.biojava.nbio.structure.Structure;
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import org.biojava.nbio.structure.StructureException;
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import org.biojava.nbio.structure.StructureFiletype;
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import org.biojava.nbio.structure.io.StructureFiletype;
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import org.biojava.nbio.structure.StructureIO;
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import org.biojava.nbio.structure.align.util.AtomCache;
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import org.junit.Test;

‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/io/TestCrystallographicMetadata.java‎

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*/
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package org.biojava.nbio.structure.test.io;
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import org.biojava.nbio.structure.StructureFiletype;
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import org.biojava.nbio.structure.io.StructureFiletype;
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import org.junit.Test;
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import static org.junit.Assert.*;
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‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/io/TestLongPdbVsMmCifParsing.java‎

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import org.biojava.nbio.structure.align.util.AtomCache;
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import org.biojava.nbio.structure.io.FileParsingParameters;
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import org.biojava.nbio.structure.io.LocalPDBDirectory.ObsoleteBehavior;
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import org.biojava.nbio.structure.io.StructureFiletype;
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import org.biojava.nbio.structure.quaternary.BioAssemblyInfo;
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import org.biojava.nbio.structure.xtal.CrystalCell;
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import org.junit.After;

‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/io/TestStructWithMultiparentChemComp.java‎

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*/
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package org.biojava.nbio.structure.test.io;
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import org.biojava.nbio.structure.StructureFiletype;
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import org.biojava.nbio.structure.io.StructureFiletype;
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import org.junit.Test;
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import static org.junit.Assert.*;
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‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/io/cif/CifFileSupplierIntegrationTest.java‎

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import org.biojava.nbio.structure.Structure;
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import org.biojava.nbio.structure.StructureImpl;
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import org.biojava.nbio.structure.StructureTools;
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import org.biojava.nbio.structure.io.cif.StructureConverter;
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import org.biojava.nbio.structure.io.cif.CifStructureConverter;
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import org.junit.Test;
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import java.io.ByteArrayInputStream;
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private static void testRoundTrip(String pdbId) throws IOException {
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URL url = new URL("https://files.rcsb.org/download/" + pdbId + ".cif");
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Structure originalStruct = StructureConverter.fromURL(url);
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Structure originalStruct = CifStructureConverter.fromURL(url);
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InputStream inputStream = new ByteArrayInputStream(StructureConverter.toText(originalStruct).getBytes());
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Structure readStruct = StructureConverter.fromInputStream(inputStream);
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InputStream inputStream = new ByteArrayInputStream(CifStructureConverter.toText(originalStruct).getBytes());
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Structure readStruct = CifStructureConverter.fromInputStream(inputStream);
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assertNotNull(readStruct);
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assertEquals(originalStruct.getChains().size(), readStruct.getChains().size());
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@Test
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public void testBiounitWriting() throws IOException {
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Structure s = createDummyStructure();
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String mmcif = StructureConverter.toText(s);
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String mmcif = CifStructureConverter.toText(s);
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String[] lines = mmcif.split("\n");
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long atomLines = Arrays.stream(lines).filter(l -> l.startsWith("ATOM")).count();
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assertNotNull(mmcif);

‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/symmetry/TestQuatSymmetryDetectorExamples.java‎

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import org.biojava.nbio.structure.Structure;
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import org.biojava.nbio.structure.StructureException;
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import org.biojava.nbio.structure.StructureFiletype;
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import org.biojava.nbio.structure.io.StructureFiletype;
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import org.biojava.nbio.structure.StructureIO;
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import org.biojava.nbio.structure.StructureTools;
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import org.biojava.nbio.structure.align.util.AtomCache;

‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/xtal/TestCrystalBuilder.java‎

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import org.biojava.nbio.structure.Structure;
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import org.biojava.nbio.structure.StructureException;
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import org.biojava.nbio.structure.StructureFiletype;
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import org.biojava.nbio.structure.io.StructureFiletype;
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import org.biojava.nbio.structure.StructureIO;
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import org.biojava.nbio.structure.align.util.AtomCache;
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import org.biojava.nbio.structure.contact.StructureInterfaceList;

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