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157 followers · 89 following

Achievements

Achievement: YOLOAchievement: Pair Extraordinairex2Achievement: QuickdrawAchievement: Pull Sharkx3Achievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: Pair Extraordinairex2Achievement: QuickdrawAchievement: Pull Sharkx3Achievement: StarstruckAchievement: Arctic Code Vault Contributor

Organizations

@bioconda @quadram-institute-bioscience @AMR-Hackathon-2021

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telatin/README.md

Hello! 👋

I'm a bioinformatician working on microbial (meta)genomics :DNA:

🤖 I like tinkering with nextflow:

📦 Some tools are available via Bioconda :

🧬 🚀 seqfu ⛰️ bamtocov 🖌️ dadaist2 🛠️ qax
GitHub Repo stars Fast toolkit for FASTX manipulation and inspection to extract coverage tracks from BAM files to analyze 16s/ITS from reads to R utilities for Qiime2 artifacts

📖 I use GitHub also for training material

📓 microbiome bioinformatics 🧔 Personal website 💻 bash training 🎥 Companion videos
Some tutorials A small blog Toy files to practice Bash A Youtube channel

I'm using Mastodon

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  1. seqfu2 seqfu2 Public

    🚀 seqfu - Sequece Fastx Utilities

    Nim 124 9

  2. covtobed covtobed Public

    ⛰ covtobed | Convert the coverage track from a BAM file into a BED file

    Makefile 44 3

  3. bamtocov bamtocov Public

    🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

    Nim 65 7

  4. gan gan Public

    📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

    Python 40 6

  5. learn_bash learn_bash Public

    Toy files and training material to introduce Linux to molecular biologists

    Python 22 4

  6. nextflow-example nextflow-example Public

    A simple DSL2 workflow: tutorial

    Nextflow 26 8