Transposon insertion Mapping pipeline

We are trying to develop a pipeline to map piggybac insertion sites in the genome. This pipeline is based on Bowtie2, fastx-toolbox.

More informations about what piggyBac transposon can do, Please visit websites listed below:

Tian Xu's lab: http://medicine.yale.edu/lab/xu/research/

Addgene Blog: http://blog.addgene.org/piggybac-ing-through-the-genome-editing-field

piggyBac Companies: https://www.systembio.com/products/gene-expression-systems/piggybac-transposon/