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Commits on Mar 9, 2018

• Fix #741

  lafita

  committed
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Commits on Mar 8, 2018

• Removing some redundant properties in child poms

  josemduarte

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  24774e5

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• Merge pull request #737 from josemduarte/issue592

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  josemduarte

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Commits on Mar 7, 2018

• Warnings cleanup

  josemduarte

  committed
  9b9837b

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• Merge pull request #738 from josemduarte/jgraphtWarnings

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  josemduarte

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• Fixing docs, #474

  josemduarte

  committed
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• Removing jgrapht library warnings, UndirectedGraph -> Graph

  josemduarte

  committed
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• Refactoring and docs as per #592

  josemduarte

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• Merge remote-tracking branch 'origin/master'

  josemduarte

  committed
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• Docs and logging

  josemduarte

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Commits on Mar 6, 2018

• Merge pull request #734 from pwrose/master

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  josemduarte

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  6a90e8f

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• Merge pull request #732 from biocryst/ncsalt

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  josemduarte

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Commits on Mar 5, 2018

• Check for insertion code fields for null values.

  pwrose

  committed
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Commits on Mar 2, 2018

• chainId to chainName for dbref

  

  Dmytro Guzenko

  committed
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Commits on Mar 1, 2018

• cleaning up and adding tags

  

  Dmytro Guzenko

  committed
  aced582

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• fixed confusion between chain name and chain id, original chains retain original names

  

  Dmytro Guzenko

  committed
  8c67933

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• NCS-aware CrystalBuilder object

  

  Dmytro Guzenko

  committed
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Commits on Feb 21, 2018

• support of arbitrary string generation strategies

  

  Dmytro Guzenko

  committed
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• 1) removed SubunitClusterUtils; 2) changed string generation to StringBuilder

  

  Dmytro Guzenko

  committed
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Commits on Feb 20, 2018

• Refactoring of clustering/symmetry detection methods to work with stoichiometry objects.

  

  Dmytro Guzenko

  committed
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Commits on Feb 15, 2018

• clustering methods reorganised

  

  Dmytro Guzenko

  committed
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Commits on Feb 8, 2018

• thresholds for local symmetries: only combinations by default

  

  Dmytro Guzenko

  committed
  d6696f1

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• using grid hashing for protein contact graph

  

  Dmytro Guzenko

  committed
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Commits on Feb 7, 2018

• remove unused imports

  

  Dmytro Guzenko

  committed
  0f7c81a

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• comments and fine-tuning the local symmetry calculations

  

  Dmytro Guzenko

  committed
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Commits on Feb 6, 2018

• local symmetry detection based on clustering and contact graphs

  

  Dmytro Guzenko

  committed
  f68a180

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• consistent stoichiometry for local clusters

  

  Dmytro Guzenko

  committed
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Commits on Jan 31, 2018

• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
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• [maven-release-plugin] prepare release biojava-5.0.0-alpha14

  josemduarte

  committed
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• Fix rcsb/symmetry#92: NullPointerException

  

  sbliven

  authored and

  josemduarte

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Commits on Jan 23, 2018

• Added comments/docs following the review.

  

  Dmytro Guzenko

  committed
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Commits on Jan 19, 2018

• Small refactoring for more flexible symmetry detection.

  

  Dmytro Guzenko

  committed
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Commits on Jan 16, 2018

• Added JUnit4 test method identifier.

  

  Dmytro Guzenko

  committed
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• Added a test case that exposes the bug in AFPOptimizer.

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  Dmytro Guzenko

  committed
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Commits on Jan 11, 2018

• Trimming zeroes in optimised alignment

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  Dmytro Guzenko

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  27fdd91

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