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biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/symmetry/TestQuatSymmetryDetectorExamples.java

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@@ -372,17 +372,9 @@ public void testSymDetectionWithSubunitClusterByEntityId() throws IOException, S
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Structure pdb = StructureIO.getStructure("BIO:1SMT:1");
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SubunitClustererParameters cp = new SubunitClustererParameters();
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// cp.setOptimizeAlignment(false);
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// cp.setSequenceIdentityThreshold(0.75);
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// cp.setMinimumSequenceLength(3);
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// cp.setAbsoluteMinimumSequenceLength(3);
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// cp.setUseSequenceCoverage(false);
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// cp.setUseStructureCoverage(false);
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// cp.setUseRMSD(false);
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cp.setUseEntityIdForSeqIdentityDetermination(true);
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cp.setClustererMethod(SubunitClustererMethod.SEQUENCE);
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QuatSymmetryParameters symmParams = new QuatSymmetryParameters();
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// symmParams.setOnTheFly(true);
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QuatSymmetryResults symmetry = QuatSymmetryDetector.calcGlobalSymmetry(
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pdb, symmParams, cp);
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