org.sonatype.oss oss-parent 9 4.0.0 org.biojava biojava pom 5.0.0-alpha3-SNAPSHOT biojava BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics. http://www.biojava.org BioJava http://www.biojava.org GNU LGPL v2 http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt repo 1.8 1.8 UTF-8 UTF-8 512M 1.7.14 2.5 scm:git:git://github.com/biojava/biojava.git scm:git:[email protected]:biojava/biojava.git https://github.com/biojava/biojava HEAD andreas Andreas Prlic [email protected] http://www.spice-3d.org University of California, San Diego http://www.rcsb.org project lead architect developer -9 http://tinyurl.com/mymsfga Amr AL-HOSSARY Andreas Dräger Andy Yates Carmelo Foti Chuan Hock Koh Douglas Myers-Turnbull Gediminas Rimsa George Waldon Hannes Brandstätter-Müller Elinow Jianjiong Gao Jonathan Warren Jose Manuel Duarte Jules Jacobsen Karl Nicholas Mark Chapman Michael Heuer Peter Rose Peter Troshin Richard Holland Robert Thornton Scooter Willis Spencer Bliven Sylvain Foisy maven-clean-plugin 3.0.0 maven-compiler-plugin 3.3 ${jdk.version} ${jdk.version} maven-dependency-plugin 2.10 maven-jar-plugin 2.6 maven-scm-plugin 1.9.4 maven-source-plugin 2.4 maven-failsafe-plugin 2.19.1 net.sf stat-scm 1.2.0 org.jvnet.jaxb2.maven2 maven-jaxb2-plugin 0.13.1 org.apache.maven.plugins maven-release-plugin 2.5.3 svn+ssh://dev.open-bio.org/home/svn-repositories/biojava/biojava-live/tags true clean install true forked-path org.apache.maven.plugins maven-javadoc-plugin 2.10.3 -Xdoclint:none 256m org.apache.maven.plugins maven-shade-plugin 2.4.2 maven-assembly-plugin 2.6 src/main/assembly/assembly.xml assemble package single org.codehaus.mojo findbugs-maven-plugin 3.0.3 org.codehaus.mojo buildnumber-maven-plugin 1.4 org.apache.maven.plugins maven-checkstyle-plugin 2.17 org.apache.maven.plugins maven-resources-plugin 2.7 maven-enforcer-plugin 1.4.1 enforce-java enforce ${maven.enforcer.jdk-version} org.sonatype.plugins nexus-staging-maven-plugin 1.6.6 true ossrh https://oss.sonatype.org/ true maven-surefire-plugin 2.19.1 -Xmx1500M false 1 **/TestLongPdbVsMmCifParsing.java **/TestAtomCachePerformance.java **/EcodInstallationTest.java org.apache.maven.plugins maven-jar-plugin false true true true all-permissions * BioJava org.codehaus.mojo findbugs-maven-plugin org.apache.maven.plugins maven-checkstyle-plugin false com.versioneye versioneye-maven-plugin 3.5.1 org.apache.maven.wagon wagon-ssh 2.6 junit junit 4.12 test org.slf4j slf4j-api ${slf4j.version} org.apache.logging.log4j log4j-slf4j-impl ${log4j.version} runtime org.apache.logging.log4j log4j-api ${log4j.version} runtime org.apache.logging.log4j log4j-core ${log4j.version} runtime org.biojava.thirdparty forester 1.038 maven-javadoc-plugin 2.10.1 true true true 1.7 false true maven-project-info-reports-plugin 2.8.1 index summary modules scm dependency-management dependencies dependency-convergence distribution-management org.codehaus.mojo findbugs-maven-plugin 3.0.3 org.apache.maven.plugins maven-checkstyle-plugin 2.17 org.apache.maven.plugins maven-jxr-plugin 2.5 codesigning false org.apache.maven.plugins maven-jarsigner-plugin 1.4 sign sign true true ${keystore.type} ${keystore.path} ${keystore.alias} ${keystore.store.password} ${keystore.key.password} ${project.build.directory}/${project.build.finalName}.jar true true sign -tsa https://timestamp.geotrust.com/tsa release-sign-artifacts performRelease true org.apache.maven.plugins maven-gpg-plugin 1.6 sign-artifacts verify sign biojava-core biojava-phylo biojava-alignment biojava-structure biojava-integrationtest biojava-structure-gui biojava-sequencing biojava-genome biojava-modfinder biojava-ws biojava-protein-disorder biojava-aa-prop biojava-survival biojava-ontology 2000 Github https://github.com/biojava/biojava/issues CruiseControl http://ccpublic.rcsb.org/