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Commits on Nov 5, 2025

• Fix merge conflicts

  bbimber

  committed
  1066b9a

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• Adopt FileLike for more pipeline APIs (#394)

  labkey-jeckels

  authored
  d8db0dd

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Commits on Oct 16, 2025

• Option to create readsets from SRA (#355)

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  bbimber

  authored
  1fac863

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Commits on Jun 10, 2025

• Minor auto-refactor code cleanup on a massive scale (#354)

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  labkey-jeckels

  authored
  c9fbe4a

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Commits on Jan 10, 2025

• Don't configure `toolsDirectory` in the global `pipelineConfig.xml` (#331)

  labkey-tchad

  authored
  240db4a

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Commits on Jan 7, 2025

• Fix JBrowseTest (#330)

  labkey-jeckels

  authored
  0728b90

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Commits on Aug 9, 2023

• Bump HTSJDK and Picard versions (#238)

  labkey-jeckels

  authored
  8f2cb9d

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Commits on Jul 28, 2023

• Remove src imports from JBrowse (#215)

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  bbimber

  authored
  78424de

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Commits on Jul 17, 2023

• 23.3_fb merge beta branch of lucene search (#208)

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  hextraza

  authored
  c88382a

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Commits on Jun 23, 2023

• Improve test

  bbimber

  committed
  8ce37ad

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Commits on May 29, 2023

• Test fix

  bbimber

  committed
  7c055d0

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• Test fix

  bbimber

  committed
  d1ab9be

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• Fix test

  bbimber

  committed
  9b02414

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Commits on Feb 16, 2023

• Updates from code inspection (#209)

  bbimber

  authored
  8ec51c4

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Commits on Dec 16, 2022

• Expand test coverage on JBrowse full text search (#187)

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  bbimber

  authored
  fb3d11c

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Commits on Nov 30, 2022

• Test fix

  bbimber

  committed
  a73f6fd

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Commits on Oct 24, 2022

• Migrate labkey-client-api to use a modern JSON library: JSON-java (#179)

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  labkey-tchad

  and

  labkey-adam

  authored
  10826a3

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Commits on Jun 1, 2022

• Improve errors

  bbimber

  committed
  3bc1602

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Commits on May 29, 2022

• Add more validation to test

  bbimber

  committed
  ababcd5

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Commits on Mar 22, 2022

• Allow user to insert tool steps to either beginning or end of tool chain (#147)

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  bbimber

  authored
  4816383

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Commits on Mar 1, 2022

• Debug SequenceTest failure (#144)

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  bbimber

  authored
  e224ea8

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Commits on Sep 17, 2021

• Fix build

  bbimber

  authored
  d164012

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• Fix merge conflicts

  bbimber

  committed
  5581cb7

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Commits on Sep 16, 2021

• Small JB2 fixes

  bbimber

  committed
  85790b1

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• Add java-based tabix indexing for jbrowse running on windows

  bbimber

  committed
  a437fe0

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• Major JBrowse update: near complete removal of JB1 code, and switch to JB2.

  bbimber

  committed
  19640fb

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Commits on Aug 20, 2021

• Merge discvr-21.3 to discvr-21.7

  bbimber

  committed
  0663467

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• Test fix

  bbimber

  committed
  3f25b8e

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Commits on Jun 26, 2021

• Fix merge conflicts

  bbimber

  committed
  b79216e

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Commits on Jun 25, 2021

• Test fix

  bbimber

  committed
  cfd6e56

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• Try to work around 'unable to delete file' problem with certain FF versions

  bbimber

  committed
  14fbcc9

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Commits on May 24, 2021

• Don't attempt to write directly to file root from test

  labkey-tchad

  committed
  dbe810a

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Commits on May 21, 2021

• Assert file deleted

  bbimber

  committed
  72e0dea

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Commits on Nov 23, 2020

• Update test expectations

  bbimber

  committed
  8e0d8b3

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Commits on Aug 25, 2020

• Update column name

  bbimber

  committed
  4971153

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