Merge branch 'master' of github.com:biojava/biojava into serialize

lafita · lafita · commit 44d73516cbe4 · 2017-08-03T11:49:23.000+01:00
diff --git a/biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/symmetry/TestQuatSymmetryDetectorExamples.java b/biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/symmetry/TestQuatSymmetryDetectorExamples.java
@@ -55,7 +55,8 @@ public class TestQuatSymmetryDetectorExamples {
 	@Test
 	public void testNMR() throws IOException, StructureException {
 
-		Structure pdb = StructureIO.getStructure("BIO:1b4c:1");
+		// as of mmCIF v5 there's no bioassemblies for NMR entries, so now we use the AU (bioassembly 0) - JD 2017-08-02
+		Structure pdb = StructureIO.getStructure("BIO:1b4c:0");
 
 		SubunitClustererParameters clusterParams = new SubunitClustererParameters();
 		QuatSymmetryParameters symmParams = new QuatSymmetryParameters();
diff --git a/biojava-structure/src/test/java/org/biojava/nbio/structure/align/util/AtomCacheTest.java b/biojava-structure/src/test/java/org/biojava/nbio/structure/align/util/AtomCacheTest.java
@@ -150,10 +150,10 @@ public void testGetStructureForChainlessDomains() throws IOException, StructureE
 		assertEquals(expectedLengthA, a.getAtomGroups().size());
 
 
-		assertTrue(structure.hasNonPolyChain("M"));
-		assertTrue(structure.hasNonPolyChain("N"));
+		assertTrue(structure.hasNonPolyChain("G"));
+		assertTrue(structure.hasNonPolyChain("H"));
 
-		Chain copper  = structure.getNonPolyChain("M");
+		Chain copper  = structure.getNonPolyChain("I");
 		assertEquals(1,copper.getAtomGroups().size());
 
 	}
