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Commits on Aug 24, 2014

• updating CookbookMSA example to up-to-date uniprot IDs

  andreasprlic

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• adding better error log if a obsolete UniProt sequence is parsed.

  andreasprlic

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Commits on Aug 23, 2014

• fixing access to local files. test better done via classpath

  andreasprlic

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Commits on Aug 15, 2014

• fixing #146 according to user request

  andreasprlic

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Commits on Aug 7, 2014

• Merge branch 'master' of https://github.com/emckee2006/biojava.git

  emckee2006

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• Remove extraneous println

  emckee2006

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Commits on Aug 4, 2014

• Added waitForStartCodon option to RNAToAminoAcidTranslator, the

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  sroughley

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• Reverting

  sroughley

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• Added an option for waitForStartCodon to RNA To Amino Acid Translator,

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  sroughley

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Commits on Aug 1, 2014

• Added stopAtStopCodons to RNAToAminoAcidTranslator, retaining existing

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Commits on Jul 31, 2014

• Fix newline handling when qualifier needs to be split into multiple

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  emckee2006

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Commits on Jun 23, 2014

• changes required to make this work using Java 8 on windows 8

  kevinwu1

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Commits on Jun 3, 2014

• Bumping version to 4.0.0

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  sbliven

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Commits on Apr 22, 2014

• adding new constructor

  andreasprlic

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Commits on Mar 25, 2014

• [maven-release-plugin] prepare for next development iteration

  andreasprlic

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• [maven-release-plugin] prepare release biojava-3.0.8

  andreasprlic

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Commits on Mar 20, 2014

• for the fix for #91 to work I believe we need to be more careful with CompoundSets

  andreasprlic

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Commits on Mar 18, 2014

• Merge pull request #16 from biojava/master

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  emckee2006

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Commits on Feb 12, 2014

• adding a http user agent, so Uniprot gets better feedback who is scripting them

  andreasprlic

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• adding a http user agent, so Uniprot gets better feedback who is scripting them

  andreasprlic

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Commits on Feb 10, 2014

• ProteinSequence was using parentSequence as a DNA Sequence. However,

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  emckee2006

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• Remove warnings

  emckee2006

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Commits on Dec 30, 2013

• Wrote a method IOUtils.print(String, File).

  dmyersturnbull

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Commits on Oct 23, 2013

• Convert %i (which formatter doesn't like) to %d for integers

  emckee2006

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Commits on Oct 16, 2013

• Clean up the majority of compile warnings

  emckee2006

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Commits on Oct 13, 2013

• moving test to correct location

  andreasprlic

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• accepting patch for #57 . Merge branch 'emckee2006-master'

  andreasprlic

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• biojava3-core/src/test/java/org/biojava3/core/sequence/io/GenbankWriterTest.java

  andreasprlic

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• fixing a check that seems wrong

  andreasprlic

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Commits on Oct 12, 2013

• Update test to use proper assert for tests

  emckee2006

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Commits on Oct 11, 2013

• Add a test of the Genbank Functionality

  emckee2006

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• Remove external dependancy on commons-lang3

  emckee2006

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• Add a fairly basic genbank writer (mostly ported from BioPython), expose

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  emckee2006

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Commits on Sep 24, 2013

• [maven-release-plugin] prepare for next development iteration

  andreasprlic

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• [maven-release-plugin] prepare release biojava-3.0.7

  andreasprlic

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