Tags: picrust/picrust2
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Picrust2-v2.6.3 (#399) Some updates: - Added a check for empty trait tables: this was specifically an issue if users created custom trait tables and these were empty/summed to zero for one of the domains - PFAM names were updated: in the PICRUSt2-SC database these used the names given by Eggnog as annotations. These have now been mapped to PFAM ID's (where possible) so that they match the description map files. The add_descriptions script can now be used with the PFAM ID's again. Note that there were a few PFAM names from the Eggnog annotations that didn't have PFAM ID's; these have been left as they are but they have no additional descriptions. - Script naming for the scripts that work with only a single domain, rather than the PICRUSt2-SC separate reference files for bacteria and archaea, has been updated. This reflects that these scripts aren't only for use with the oldIMG database, but can be for fungi, either/or of the bacteria/archaea files, another custom database, etc.
Fix picrust2-env.yaml dependencies (#378) 1. ete3 has to be installed from etetoolkit channel. conda-forge does not work, even though it is listed on https://anaconda.org/conda-forge/ete3. 2. Installing sepp 4.5.5 requires python3.10. 3. Runnning test requires typeguard 4.4.2 to be specified separately.
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