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Tania Allard
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Fixed setup
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‎README.md‎

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@@ -13,7 +13,8 @@ The slides for the workshop can be found here:
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We will encourage discussions over the workshop, for this purpose we will be using an Etherpad. Click on the following link: [https://public.etherpad-mozilla.org/p/ReproduciblePython](https://public.etherpad-mozilla.org/p/ReproduciblePython)
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## What do I need for this workshop?
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The installation instructions can be found at [http://bitsandchips.me/ReproduciblePython/Setup.html](http://bitsandchips.me/ReproduciblePython/Setup.html)
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‎Setup.ipynb‎

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" <!-- Completing the Git Setup Wizard -->\n",
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" <li>Click on \"Finish\".</li>\n",
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" </ol>\n",
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" </li>\n",
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" <li>\n",
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" If your \"HOME\" environment variable is not set (or you don't know what this is):\n",
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" <ol>\n",
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" <p><code>setx HOME \"%USERPROFILE%\"</code></p>\n",
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" </li>\n",
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" <li>Press [Enter], you should see <code>SUCCESS: Specified value was saved.</code></li>\n",
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" <li>Quit command prompt by typing <code>exit</code> then pressing [Enter]</li>\n",
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" </ol>\n",
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" </li>\n",
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" </ol>\n",
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" <p>This will provide you with both Git and Bash in the Git Bash program.</p>\n",
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" <li>Quit command prompt by typing <code>exit</code> then pressing [Enter]</li>\n",
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" \n",
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"This will provide you with both Git and Bash in the Git Bash program.\n",
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"\n",
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"\n",
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"📌 **MAC OS X**\n",
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" \n",
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"📌 **MAC OS X**\n",
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"\n",
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" <strong>For OS X 10.9 and higher</strong>, install Git for Mac\n",
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" by downloading and running the most recent \"mavericks\" installer from\n",
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" <a href=\"http://sourceforge.net/projects/git-osx-installer/files/\">this list</a>.\n",
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" After installing Git, there will not be anything in your <code>/Applications</code> folder,\n",
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" as Git is a command line program.\n",
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" <strong>For older versions of OS X (10.5-10.8)</strong> use the\n",
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" most recent available installer labelled \"snow-leopard\"\n",
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" <a href=\"http://sourceforge.net/projects/git-osx-installer/files/\">available here</a>.\n",
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"<strong>For OS X 10.9 and higher</strong>, install Git for Mac\n",
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"by downloading and running the most recent \"mavericks\" installer from\n",
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"<a href=\"http://sourceforge.net/projects/git-osx-installer/files/\">this list</a>.\n",
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"After installing Git, there will not be anything in your <code>/Applications</code> folder,\n",
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"as Git is a command line program.\n",
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"\n",
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"\n",
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"<strong>For older versions of OS X (10.5-10.8)</strong> use the\n",
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"most recent available installer labelled \"snow-leopard\"\n",
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"<a href=\"http://sourceforge.net/projects/git-osx-installer/files/\">available here</a>.\n",
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" \n",
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"📌 **Linux** \n",
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"\n",
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"2. Make sure you know where you saved the file\n",
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"3. Open your shell and navigate to the location of the file, for example if you saved it in Desktop you would type in `cd Desktop`\n",
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"4. Type in the following command to create an environment fro the file:\n",
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"```bash\n",
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"<pre><code>\n",
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"conda env create -f environment.yml\n",
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"```\n",
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"You should see the packages being installed. Note it could take a while so you can go and grab yourself a cup of coffee or tea ☕\n",
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"</code></pre>\n",
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"\n",
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"\n",
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"If you have never used Jupyter notebooks you could have a look at this [Tutorial](https://www.dataquest.io/blog/jupyter-notebook-tutorial/) before the workshop.\n"
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"You should see the packages being installed. Note it could take a while so you can go and grab yourself a cup of coffee or tea ☕\n",
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"\n",
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"---\n",
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"⭐ If you have never used Jupyter notebooks you could have a look at this [Tutorial](https://www.dataquest.io/blog/jupyter-notebook-tutorial/) to familiarize yourself before the \n"
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]
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},
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{
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"\n",
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"Go to the [GitHub homepage](https://github.com/) to register for a new account, you should see the following page\n",
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"\n",
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"<img src='./assets/gh.png' width=80%>\n",
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"<img src='https://github.com/trallard/ReproduciblePython/blob/master/assets/GH.png?raw=true' width=80%>\n",
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"\n",
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"\n",
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"- Choose a username, email address and password.\n",
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"\n",
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"Go to [https://travis-ci.org/](https://travis-ci.org/), if you do not have an account yet you should see the following landing page:\n",
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"\n",
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"<img src='./assets/travis1.png' width=80%>\n",
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"<img src='https://github.com/trallard/ReproduciblePython/blob/master/assets/travis1.PNG?raw=true' width=80%>\n",
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"\n",
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"Click on the green *Sign up* button and login using your GitHub username and password\n",
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"\n",
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"\n",
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"<img src='./assets/travis2.png'>"
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"<img src='https://github.com/trallard/ReproduciblePython/blob/master/assets/travis2.PNG?raw=true'>"
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]
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},
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{

‎docs/Setup.html‎

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}
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/* Flexible box model classes */
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/* Taken from Alex Russell http://infrequently.org/2009/08/css-3-progress/ */
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/* This file is a compatability layer. It allows the usage of flexible box
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/* This file is a compatability layer. It allows the usage of flexible box
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model layouts accross multiple browsers, including older browsers. The newest,
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universal implementation of the flexible box model is used when available (see
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`Modern browsers` comments below). Browsers that are known to implement this
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`Modern browsers` comments below). Browsers that are known to implement this
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new spec completely include:
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Firefox 28.0+
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Chrome 29.0+
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Internet Explorer 11+
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Internet Explorer 11+
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Opera 17.0+
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Browsers not listed, including Safari, are supported via the styling under the
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background: #f7f7f7;
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border-top: 1px solid #cfcfcf;
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border-bottom: 1px solid #cfcfcf;
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/* This injects handle bars (a short, wide = symbol) for
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/* This injects handle bars (a short, wide = symbol) for
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the resize handle. */
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}
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div#pager .ui-resizable-handle::after {
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.highlight .il { color: #666666 } /* Literal.Number.Integer.Long */
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</style>
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<style type="text/css">
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/* Temporary definitions which will become obsolete with Notebook release 5.0 */
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.ansi-black-fg { color: #3E424D; }
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.ansi-black-bg { background-color: #3E424D; }
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div.cell {
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display: block;
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page-break-inside: avoid;
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div.output_wrapper {
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display: block;
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div.output {
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</style>
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<!-- Completing the Git Setup Wizard -->
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<li>Click on "Finish".</li>
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</ol>
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&lt;/li&gt;
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<li>
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If your "HOME" environment variable is not set (or you don't know what this is):
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<ol>
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<p><code>setx HOME "%USERPROFILE%"</code></p>
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</li>
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<li>Press [Enter], you should see <code>SUCCESS: Specified value was saved.</code></li>
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<li>Quit command prompt by typing <code>exit</code> then pressing [Enter]</li>
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&lt;/ol&gt;
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&lt;/li&gt;
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&lt;/ol&gt;
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<p>This will provide you with both Git and Bash in the Git Bash program.</p></p>
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<li>Quit command prompt by typing <code>exit</code> then pressing [Enter]</li></p>
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</ol></ol>
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<p>This will provide you with both Git and Bash in the Git Bash program.</p>
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<p>📌 <strong>MAC OS X</strong></p>
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<p>The default shell in all versions of Mac OS X is Bash, so no
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need to install anything. You access Bash from the Terminal
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install (described above).</p>
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<p>📌 <strong>MAC OS X</strong></p>
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<p><strong>For OS X 10.9 and higher</strong>, install Git for Mac
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by downloading and running the most recent "mavericks" installer from
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<a href="http://sourceforge.net/projects/git-osx-installer/files/">this list</a>.
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After installing Git, there will not be anything in your <code>/Applications</code> folder,
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as Git is a command line program.
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<strong>For older versions of OS X (10.5-10.8)</strong> use the
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most recent available installer labelled "snow-leopard"
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<a href="http://sourceforge.net/projects/git-osx-installer/files/">available here</a>.</p>
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by downloading and running the most recent "mavericks" installer from
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<a href="http://sourceforge.net/projects/git-osx-installer/files/">this list</a>.
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After installing Git, there will not be anything in your <code>/Applications</code> folder,
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as Git is a command line program.</p>
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<p><strong>For older versions of OS X (10.5-10.8)</strong> use the
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most recent available installer labelled "snow-leopard"
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<a href="http://sourceforge.net/projects/git-osx-installer/files/">available here</a>.</p>
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<p>📌 <strong>Linux</strong></p>
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<p>If Git is not already available on your machine you can try to
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install it via your distro's package manager. For Debian/Ubuntu run
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<li>Download the Python 3 installer for Windows.</li>
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<li>Install Python 3 using all of the defaults for installation <em>except</em> make sure to check <strong>Make Anaconda the default Python</strong>.</li>
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</ol></p>
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<p>📌 <strong>MAC OS X</strong></p>
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<p><a href="https://www.youtube.com/watch?v=TcSAln46u9U">Video Tutorial</a>
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<ol>
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<li>Download <a href="https://raw.githubusercontent.com/trallard/ReproduciblePython/master/environment.yml">environment.yml</a> to your local computer by right-clicking on the following link: <a href="https://raw.githubusercontent.com/trallard/ReproduciblePython/master/environment.yml">environment.yml</a></li>
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<li>Make sure you know where you saved the file</li>
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<li>Open your shell and navigate to the location of the file, for example if you saved it in Desktop you would type in <code>cd Desktop</code></li>
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<li>Type in the following command to create an environment fro the file:<div class="highlight"><pre><span></span>conda env create -f environment.yml
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</pre></div>
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You should see the packages being installed. Note it could take a while so you can go and grab yourself a cup of coffee or tea ☕</li>
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</ol>
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<p>If you have never used Jupyter notebooks you could have a look at this <a href="https://www.dataquest.io/blog/jupyter-notebook-tutorial/">Tutorial</a> before the workshop.</p>
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<li>Type in the following command to create an environment fro the file:</li></ol>
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<pre><code>
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conda env create -f environment.yml
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</code></pre>
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<p>You should see the packages being installed. Note it could take a while so you can go and grab yourself a cup of coffee or tea ☕</p>
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<hr>
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<p>⭐ If you have never used Jupyter notebooks you could have a look at this <a href="https://www.dataquest.io/blog/jupyter-notebook-tutorial/">Tutorial</a> to familiarize yourself before the</p>
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</div>
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<div class="text_cell_render border-box-sizing rendered_html">
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<h2 id="Getting-your-accounts-ready">Getting your accounts ready<a class="anchor-link" href="#Getting-your-accounts-ready">&#182;</a></h2><h3 id="GitHub">GitHub<a class="anchor-link" href="#GitHub">&#182;</a></h3><p><br></p>
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<div class='warn'> Note you do not need to do the following if you already have a GitHub account. You only need to make sure you know your username and password </div><p>Go to the <a href="https://github.com/">GitHub homepage</a> to register for a new account, you should see the following page</p>
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<p>&lt;img src='./assets/gh.png' width=80%&gt;</p>
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<img src="https://github.com/trallard/ReproduciblePython/blob/master/assets/GH.png?raw=true">
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<ul>
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<li>Choose a username, email address and password.</li>
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<li>Click the green <em>Sign up</em> button</li>
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<li>Confirm your email address</li>
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<li>Choose the personal default plan</li>
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</ul>
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<h3 id="Travis-CI">Travis CI<a class="anchor-link" href="#Travis-CI">&#182;</a></h3><p>Go to <a href="https://travis-ci.org/">https://travis-ci.org/</a>, if you do not have an account yet you should see the following landing page:</p>
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<p>&lt;img src='./assets/travis1.png' width=80%&gt;</p>
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<p><img src='https://github.com/trallard/ReproduciblePython/blob/master/assets/travis1.PNG?raw=true'></p>
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<p>Click on the green <em>Sign up</em> button and login using your GitHub username and password</p>
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<p><img src='./assets/travis2.png'></p>
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<p><img src='https://github.com/trallard/ReproduciblePython/blob/master/assets/travis2.PNG?raw=true'></p>
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</body>
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