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@solgenomics Breedbase and Solgenomics

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    183 repositories

    • sgn

      Public
      The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites
      perl
      PLpgSQL
      •
      MIT License
      •39•72•560•5•Updated Jan 3, 2026Jan 3, 2026

    • gbsappui

      Public
      A user interface for GBSapp that can be integrated into Breedbase
      Perl
      •
      MIT License
      •0•0•17•0•Updated Dec 22, 2025Dec 22, 2025

    • breedbase_dockerfile

      Public
      The Dockerfiles for breeDBase
      Dockerfile
      •
      MIT License
      •9•10•0•0•Updated Dec 19, 2025Dec 19, 2025

    • solgenomics

      Public
      The mason components needed to run the solgenomics.net website
      MIT License
      •0•1•1•0•Updated Dec 17, 2025Dec 17, 2025

    • fernbase

      Public
      MIT License
      •0•0•0•0•Updated Dec 7, 2025Dec 7, 2025

    • nicotianabase

      Public
      Nicotiana base
      MIT License
      •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

    • cassbase

      Public
      The mason components for the cassbase database, a variation of cassavabase for the CASS project
      Perl
      •
      MIT License
      •0•0•1•1•Updated Nov 21, 2025Nov 21, 2025

    • musabase

      Public
      0•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • Tea

      Public
      code and database for the expression query, mining, analysis, and visualization tools
      HTML
      •
      MIT License
      •5•8•20•0•Updated Nov 12, 2025Nov 12, 2025

    • sugarcane-industry

      Public
      PLpgSQL
      •
      MIT License
      •1•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • cxgn-corelibs

      Public
      Various Modules relating to SGN and Breedbase
      perl
      Perl
      •14•10•3•3•Updated Oct 28, 2025Oct 28, 2025

    • crispget

      Public template
      HTML
      •
      MIT License
      •0•0•1•0•Updated Oct 21, 2025Oct 21, 2025

    • VIGS

      Public
      Stand Alone version of SGN VIGS Tool
      HTML
      •
      MIT License
      •3•4•0•0•Updated Oct 16, 2025Oct 16, 2025

    • cannabase

      Public
      C. sativa base
      MIT License
      •0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • yambase

      Public
      web interface for Yambase database
      0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • sweetpotatobase

      Public
      Web interface for SweetPotatoBase website
      0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • perl-local-lib

      Public
      Git repository for Perl local-lib for faster installs (eg. Dockerfiles)
      Perl
      •0•0•0•1•Updated Oct 3, 2025Oct 3, 2025

    • okra.breedbase.org

      Public
      PLpgSQL
      •
      MIT License
      •1•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • cea

      Public
      Cassava Expression Atlas
      1•0•1•0•Updated Sep 19, 2025Sep 19, 2025

    • cotton

      Public
      PLpgSQL
      •
      MIT License
      •0•1•0•0•Updated Sep 17, 2025Sep 17, 2025

    • courtney.breedbase.org

      Public
      a breedbase instance for Lance of Giovannoni lab
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • taro.breedbase.org

      Public
      A breedbase site for taro
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • resistapple.breedbase.org

      Public
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • milkweed

      Public
      0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • inventory-test.breedbase.org

      Public
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • brri-drought.breedbase.org

      Public
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • apollo.breedbase.org

      Public
      docker based apollo instance
      0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • citrus-image-analysis.breedbase.org

      Public
      MIT License
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • gtsimsrch

      Public
      C
      •1•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • snpsnapp.breedbase.org

      Public
      The production site for the snpsnapp app
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025