Fix pointers[y] is null error

aegugup · aegugup · commit bff5de7a3b6e · 2022-07-25T20:07:23.000-06:00
Initialize pointers array to dimension (ye,1)
diff --git a/biojava-alignment/src/main/java/org/biojava/nbio/alignment/routines/AlignerHelper.java b/biojava-alignment/src/main/java/org/biojava/nbio/alignment/routines/AlignerHelper.java
@@ -581,7 +581,7 @@ public static Last[][] setScoreVector(int x, int xb, int yb, int ye, int gep, in
 		if (x == xb) {
 			pointers = new Last[ye + 1][1];
 		} else {
-			pointers = new Last[ye + 1][];
+			pointers = new Last[ye + 1][1];
 			pointers[0] = new Last[1];
 			for (int y = 1; y < scores[x].length; y++) {
 				pointers[y][0] = setScorePoint(x, y, gep, subs[y], scores);
