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Pull requests: loculus-project/loculus

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Pull requests list

feat(prepro): Add deacon
#6876 opened Jul 9, 2026 by maverbiest Contributor • Draft
3 tasks
chore(deps): bump ws from 8.18.2 to 8.21.0 in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6875 opened Jul 9, 2026 by dependabot Bot Loading…
feat(deposition): no longer special case broker for manifest creation deposition related to ENA/INSDC deposition
#6874 opened Jul 9, 2026 by anna-parker Contributor Loading…
3 tasks
3
chore(deps): bump astro from 6.4.8 to 7.0.7 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6869 opened Jul 8, 2026 by dependabot Bot Loading…
chore(deps-dev): bump @vitejs/plugin-react from 5.2.0 to 6.0.3 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6868 opened Jul 8, 2026 by dependabot Bot Loading…
chore(deps): bump typescript from 6.0.3 to 7.0.2 in /docs dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6863 opened Jul 8, 2026 by dependabot Bot Loading…
fix(website): Disable submit button for submission/revision/edit during file uploads website Tasks related to the web application
#6855 opened Jul 7, 2026 by tombch Collaborator • Draft
3 tasks
1
feat(backend, config): configure S3 to use IAM roles backend related to the loculus backend component deployment Code changes targetting the deployment infrastructure
#6846 opened Jul 6, 2026 by anna-parker Contributor • Draft
2
feat(website,backend): notification bell for sequences awaiting review [WIP] backend related to the loculus backend component preview Triggers a deployment to argocd update_db_schema website Tasks related to the web application
#6841 opened Jul 5, 2026 by corneliusroemer Contributor • Draft
1
1
fix(website): centralize date formatting and add UTC timezone to data use terms history preview Triggers a deployment to argocd
#6839 opened Jul 2, 2026 by Copilot AI • Draft
3 tasks done
1
@corneliusroemer
2
Feature branch for Raw reads preview Triggers a deployment to argocd
#6817 opened Jun 30, 2026 by anna-parker Contributor • Draft
3 tasks
1
feat(deposition): add support for submission of raw reads to ENA deposition related to ENA/INSDC deposition preview Triggers a deployment to argocd
#6816 opened Jun 30, 2026 by anna-parker Contributor Loading…
5 of 6 tasks
18
feat(backend): keep only latest preprocessing pipeline version backend related to the loculus backend component
#6813 opened Jun 30, 2026 by corneliusroemer Contributor • Draft
1
wip(deposition): Allow notifying on manifest changes if policy is warn deposition related to ENA/INSDC deposition
#6810 opened Jun 30, 2026 by corneliusroemer Contributor • Draft
feat(observability): expose Prometheus metrics and wire ServiceMonitor backend related to the loculus backend component deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd
#6807 opened Jun 30, 2026 by clonder Contributor • Draft
4
test(integration-tests): add Ebola Sudan submission edge-case tests tests Test related issues
#6796 opened Jun 29, 2026 by corneliusroemer Contributor • Draft
3 tasks
1
refactor(website): unify modals onto BaseDialog, drop MUI modal and react-confirm-alert preview Triggers a deployment to argocd website Tasks related to the web application
#6780 opened Jun 29, 2026 by corneliusroemer Contributor Loading…
1
21
feat!(prepro): use submissionId for displayName if specimenCollectorSampleId cannot be parsed preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd
#6774 opened Jun 29, 2026 by maverbiest Contributor Loading…
2 of 3 tasks
1
39
Exploration demo for bulk revision with files backend related to the loculus backend component website Tasks related to the web application
#6770 opened Jun 25, 2026 by tombch Collaborator • Draft
3 tasks
feat(website): add SeqSet citations section to admin dashboard backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6769 opened Jun 25, 2026 by theosanderson-agent Collaborator Loading…
12
Bulk file revision: reuse existing files without exposing fileMapping to website users backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6767 opened Jun 25, 2026 by anna-parker Contributor • Draft
3 tasks
1
demo exploration: rev files backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6764 opened Jun 25, 2026 by theosanderson-agent Collaborator • Draft
fix(website): Hide management buttons (data use terms, revise, revoke) on revocation version website Tasks related to the web application
#6739 opened Jun 24, 2026 by tombch Collaborator Loading…
3 tasks
2
refactor(website): Split fetching of backend and lapis sequence details in findOrganismAndData website Tasks related to the web application
#6724 opened Jun 22, 2026 by tombch Collaborator • Draft
3 tasks
2
feat(everything): POC claude - Cross organism queries: One SILO approach
#6723 opened Jun 20, 2026 by anna-parker Contributor • Draft
18
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