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Commits on Sep 19, 2014

• Fix problems exposed by using mmCIF files (towards #173)

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• Fix #172. ResidueNumbers use the old chain IDs when read from mmCIF

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Commits on Sep 17, 2014

• Solving issue #145

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• Solving issue #160

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Commits on Aug 30, 2014

• #155 and some #111

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Commits on Aug 29, 2014

• More #111 and #155

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Commits on Aug 27, 2014

• Introduced a more general interface-between-2-molecules representation

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• Added unit test for CrystalBuilder and fixed some docs

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• Implemented calculation of unique crystal contacts

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Commits on Aug 25, 2014

• Merge tag 'biojava-3.1.0' into master

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Commits on Aug 23, 2014

• fixing access to local files. test better done via classpath

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Commits on Aug 11, 2014

• Changed documentation to show how to do Calpha contact calculations.

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Commits on Aug 8, 2014

• Implemented contact calculation through geometric hashing

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Commits on Jun 3, 2014

• Adding CECPParameters class

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• Fix parsing of SCOP 1.71 (#115)

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• less verbose test

  

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Commits on May 2, 2014

• Fix parsing of SCOP 1.71 (#115)

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Commits on Apr 4, 2014

• Better handling of exceptions in parsers, towards goal #111

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Commits on Apr 3, 2014

• Fixing test after latest changes

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Commits on Mar 27, 2014

• less verbose test

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• don't specify tmp file names for AtomCache. It does that automatically. Also: /tmp does not exist on windows.

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• don't specify tmp file names for AtomCache. It does that automatically. Also: /tmp does not exist on windows.

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• Adding some more tests for different parsing issues

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• New test for experimental techniques parsing

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• New test for raw pdb files + fixes to isNmr heuristics

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• Test is now completely silent

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• Reducing verbosity of test, switch to full output setting VERBOSE=true

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• Added test for crystal info and some small fixes

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• Implemented full treatment of xtal info and experimental technique

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Commits on Mar 24, 2014

• more refactoring of junit tests, slow tests go to integration test module

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• moving slow running unit tests into integrationtests package

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Commits on Mar 21, 2014

• need to make sure the setup is called before every test, if run the first time, otherwise problems with seqres alignment #106

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Commits on Mar 18, 2014

• resolving #76 fixing problem when parsing altLocs

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• Improving TestAltLocs and fixing issue with SiftsChainToUniprotMapping

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Commits on Mar 3, 2014

• Merge branch 'master' of https://github.com/biojava/biojava

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