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Commits on Sep 19, 2014

• Fix #173. Use mmCIF as default structure format

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• Fix problems exposed by using mmCIF files (towards #173)

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• Fix #172. ResidueNumbers use the old chain IDs when read from mmCIF

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Commits on Sep 18, 2014

• Adding missing log4j2.xml files and unifying config across modules #155

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Commits on Sep 17, 2014

• Solving issue #145

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• Solving issue #160

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• Better logging and remove some warnings, #155

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Commits on Sep 16, 2014

• Fixing the other half of #162

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Commits on Sep 15, 2014

• A fix for one of the issues reported in #162

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Commits on Sep 9, 2014

• Reduced memory usage of unique interfaces calculation

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• Improved the unique xtal interfaces calculation

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• New feature: parsing of MTRIXn/_struct_ncs_oper records,

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Commits on Sep 2, 2014

• Improved docs, more logging and improved pdb vs cif test, see #162

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Commits on Sep 1, 2014

• Better logging to debug #145

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Commits on Aug 31, 2014

• More logging #155

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Commits on Aug 30, 2014

• #155 and some #111

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Commits on Aug 29, 2014

• More #111 and #155

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• Changing logging configuration (#155)

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• Convert SimpleMMcifParser to use SLF4J logging

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• More on #155 and #111

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• Important fix for #155, was not specifying runtime scope correctly

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Commits on Aug 28, 2014

• Default log4j config now outputs to stderr

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• Some fixes for #111 and #155

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• Fixed issue: wasn't pointing to the right class in logger

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• Introducing slf4j #155

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Commits on Aug 27, 2014

• #156 adding missing fields

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• #156 adding missing fields

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• Introduced a more general interface-between-2-molecules representation

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• Added unit test for CrystalBuilder and fixed some docs

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• Some refactoring and improvement of docs

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• Improved HETATOMs filtering for interface ASA calculation

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• Now hetatoms can be filtered by size when calculating ASAs in interfaces

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• Implemented calculation of unique crystal contacts

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Commits on Aug 26, 2014

• Improved mmcif logging (#154)

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• Fixing minor compile error from merge

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