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52 | 52 | import org.biojava.bio.structure.StructureTools; |
53 | 53 | import org.biojava.bio.structure.UnknownPdbAminoAcidException; |
54 | 54 | import org.biojava.bio.structure.io.FileParsingParameters; |
55 | | - |
56 | 55 | import org.biojava.bio.structure.io.PDBParseException; |
57 | 56 | import org.biojava.bio.structure.io.SeqRes2AtomAligner; |
58 | 57 | import org.biojava.bio.structure.io.mmcif.model.AtomSite; |
59 | 58 | import org.biojava.bio.structure.io.mmcif.model.AuditAuthor; |
60 | 59 | import org.biojava.bio.structure.io.mmcif.model.ChemComp; |
61 | | - |
62 | 60 | import org.biojava.bio.structure.io.mmcif.model.ChemCompAtom; |
63 | 61 | import org.biojava.bio.structure.io.mmcif.model.ChemCompBond; |
64 | 62 | import org.biojava.bio.structure.io.mmcif.model.ChemCompDescriptor; |
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81 | 79 | import org.biojava.bio.structure.io.mmcif.model.Refine; |
82 | 80 | import org.biojava.bio.structure.io.mmcif.model.Struct; |
83 | 81 | import org.biojava.bio.structure.io.mmcif.model.StructAsym; |
| 82 | +import org.biojava.bio.structure.io.mmcif.model.StructConn; |
84 | 83 | import org.biojava.bio.structure.io.mmcif.model.StructKeywords; |
85 | 84 | import org.biojava.bio.structure.io.mmcif.model.StructRef; |
86 | 85 | import org.biojava.bio.structure.io.mmcif.model.StructRefSeq; |
@@ -115,6 +114,7 @@ public class SimpleMMcifConsumer implements MMcifConsumer { |
115 | 114 | List<EntitySrcGen> entitySrcGens; |
116 | 115 | List<EntitySrcNat> entitySrcNats; |
117 | 116 | List<EntitySrcSyn> entitySrcSyns; |
| 117 | + List<StructConn> structConn; |
118 | 118 |
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119 | 119 | Map<String,String> asymStrandId; |
120 | 120 |
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@@ -668,6 +668,7 @@ public void documentStart() { |
668 | 668 | entitySrcGens = new ArrayList<EntitySrcGen>(); |
669 | 669 | entitySrcNats = new ArrayList<EntitySrcNat>(); |
670 | 670 | entitySrcSyns = new ArrayList<EntitySrcSyn>(); |
| 671 | + structConn = new ArrayList<StructConn>(); |
671 | 672 | } |
672 | 673 |
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673 | 674 |
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