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Added Java Bean for mmcif category _struct_conn
1 parent e281cde commit 91a7b27

2 files changed

Lines changed: 461 additions & 2 deletions

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biojava3-structure/src/main/java/org/biojava/bio/structure/io/mmcif/SimpleMMcifConsumer.java

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -52,13 +52,11 @@
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import org.biojava.bio.structure.StructureTools;
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import org.biojava.bio.structure.UnknownPdbAminoAcidException;
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import org.biojava.bio.structure.io.FileParsingParameters;
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import org.biojava.bio.structure.io.PDBParseException;
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import org.biojava.bio.structure.io.SeqRes2AtomAligner;
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import org.biojava.bio.structure.io.mmcif.model.AtomSite;
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import org.biojava.bio.structure.io.mmcif.model.AuditAuthor;
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import org.biojava.bio.structure.io.mmcif.model.ChemComp;
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import org.biojava.bio.structure.io.mmcif.model.ChemCompAtom;
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import org.biojava.bio.structure.io.mmcif.model.ChemCompBond;
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import org.biojava.bio.structure.io.mmcif.model.ChemCompDescriptor;
@@ -81,6 +79,7 @@
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import org.biojava.bio.structure.io.mmcif.model.Refine;
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import org.biojava.bio.structure.io.mmcif.model.Struct;
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import org.biojava.bio.structure.io.mmcif.model.StructAsym;
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import org.biojava.bio.structure.io.mmcif.model.StructConn;
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import org.biojava.bio.structure.io.mmcif.model.StructKeywords;
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import org.biojava.bio.structure.io.mmcif.model.StructRef;
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import org.biojava.bio.structure.io.mmcif.model.StructRefSeq;
@@ -115,6 +114,7 @@ public class SimpleMMcifConsumer implements MMcifConsumer {
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List<EntitySrcGen> entitySrcGens;
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List<EntitySrcNat> entitySrcNats;
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List<EntitySrcSyn> entitySrcSyns;
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List<StructConn> structConn;
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Map<String,String> asymStrandId;
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@@ -668,6 +668,7 @@ public void documentStart() {
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entitySrcGens = new ArrayList<EntitySrcGen>();
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entitySrcNats = new ArrayList<EntitySrcNat>();
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entitySrcSyns = new ArrayList<EntitySrcSyn>();
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structConn = new ArrayList<StructConn>();
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}
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