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Commits on Sep 1, 2016

• Move long tests to the intergationtest package

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  lafita

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Commits on Aug 31, 2016

• Fix Calc centroid and center of mass documentation

  lafita

  committed
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Commits on Aug 30, 2016

• Small fix TestQsAlign

  lafita

  committed
  72c6768

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• Small change to SuperpositionQCP test

  lafita

  committed
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• Merge branch 'master' into quatalign

  lafita

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Commits on Aug 23, 2016

• Merge pull request #555 from andreasprlic/master

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  sbliven

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Commits on Aug 21, 2016

• TestMMcifOrganismParsing: Using enum rather than String for comparison.

  andviane

  committed
  d6c187b

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• SymmetryTools.getResetVal: Do not compare NaNs with ==, use

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  andviane

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Commits on Aug 19, 2016

• Addressing @josemduarte 's comment to change log level for method.

  andreasprlic

  committed
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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

  committed
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• making output less verbose

  andreasprlic

  committed
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• making output less verbose

  andreasprlic

  committed
  8ba289d

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• setting default log level to warn

  andreasprlic

  committed
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• making output less verbose

  andreasprlic

  committed
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• making output less verbose

  andreasprlic

  committed
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• making output less verbose

  andreasprlic

  committed
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• making output less verbose

  andreasprlic

  committed
  7817e94

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• Deprecating methods that got used to the Chain interface.

  andreasprlic

  committed
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• moving utility classes to detect type of Chain to the Chain interface level (used to be StructureTools).

  andreasprlic

  committed
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Commits on Aug 17, 2016

• adding check for lPeptideLinking to isPolymeric

  andreasprlic

  committed
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• Merge branch 'master' of github.com:biojava/biojava

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  andreasprlic

  committed
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• Making recent MmtfActions.writeToOutputStream static

  sbliven

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Commits on Aug 16, 2016

• Fix the doc

  abradle

  committed
  77237f3

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• Update the outputstream to be created outside the function

  abradle

  committed
  f69b182

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• Merge branch 'master' of github.com:biojava/biojava

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  andreasprlic

  committed
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• Write MMTF to an OutputStream

  abradle

  committed
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• [maven-release-plugin]prepare for next development iteration

  

  Jenkins

  committed
  2a14437

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• [maven-release-plugin]prepare release biojava-5.0.0-alpha6

  

  Jenkins

  committed
  18dcaba

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• Fixed the logic of working out which type of group a group is.

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  abradle

  committed
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• Fixed the formatting and added some javadocs

  abradle

  committed
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Commits on Aug 15, 2016

• Merge branch 'master' of github.com:biojava/biojava

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  andreasprlic

  committed
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• Fixed handling of entities with no chains

  abradle

  committed
  95a409b

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• Fixed a null pointer exception from getAtomFromRecord

  abradle

  committed
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• Added handling of different residue types.

  abradle

  committed
  965dc23

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• Fixed a bug in generation of disulphide bonds - including a test case.

  abradle

  committed
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