• zotero-better-bibtex’ auto export:

  • Path is bib/library.bib
  • Turn off title casing in “Better Bibtex” → “Export” → “Misc”

• Dependencies

  python -m virtualenv --no-seed -p 3.12 .venv
  source .venv/bin/activate  # or: overlay activate .venv/bin/activate.nu
  uv pip install -r requirements.txt
  R -q -s -e 'chooseCRANmirror(ind=0); install.packages(readLines("requirements-r.txt"))'

• Git checks and filters

  pre-commit install
  nbstripout --install --attributes .gitattributes

Build in docker:

docker build -t dissertation .
docker run -it -v "$PWD:/home/me" dissertation

Build locally (needs all kinds of Python and R stuff)

# once: python -m ipykernel install --user --name dissertation --display-name='Python (diss)'
snakemake -j4 prd_dissertation.pdf