Commits

Breadcrumbs

History for

onmaster

User selector

All users

All time

Commit History

Commits on Jun 2, 2017

• Added List<String> of comments with getter and setter into AbstractSequence.java;

  Show description for 6fa0df9
  jimty0511

  committed
  6fa0df9

  Copy full SHA for 6fa0df9

• Merge pull request #666 from psoares/master

  Show description for 8fd2685
  josemduarte

  authored
  8fd2685

  Copy full SHA for 8fd2685

Commits on May 31, 2017

• Removed unused import.

  psoares

  committed
  5e4eb1d

  Copy full SHA for 5e4eb1d

• Fix for #663 and some code cleanup.

  psoares

  committed
  5e52308

  Copy full SHA for 5e52308

• Merge pull request #660 from heuermh/read-rna-sequences

  Show description for be50915
  josemduarte

  authored
  be50915

  Copy full SHA for be50915

Commits on Apr 27, 2017

• Add methods for reading RNA sequences.

  heuermh

  committed
  0169997

  Copy full SHA for 0169997

Commits on Apr 26, 2017

• Changing all line ending to unix (to match .gitattributes)

  sbliven

  committed
  21ea32a

  Copy full SHA for 21ea32a

Commits on Apr 13, 2017

• Exposing alignment mappings to be able to map query sequence to target sequence

  valasatava

  committed
  c29825e

  Copy full SHA for c29825e

Commits on Apr 4, 2017

• Refactoring FileDownload util to be a part of biojava-core project

  valasatava

  committed
  3cefc3f

  Copy full SHA for 3cefc3f

Commits on Apr 3, 2017

• Adding a method to check whether an array of sequences contains at least two sequences of an equal length

  valasatava

  committed
  aae8b49

  Copy full SHA for aae8b49

Commits on Mar 28, 2017

• hashCode() added for all the classes where added an equals()

  valasatava

  committed
  2d90038

  Copy full SHA for 2d90038

• Merge branch 'sequenceEquals' of https://github.com/valasatava/biojava into sequenceEquals

  valasatava

  committed
  dbcf542

  Copy full SHA for dbcf542

• hashCode added to SequenceFileProxyLoader class

  valasatava

  committed
  3834d4b

  Copy full SHA for 3834d4b

• adding a sequence.equals(Sequence) and hashCode class to sequences.

  valasatava

  committed
  3dadec1

  Copy full SHA for 3dadec1

• changing equals(Sequence) method signature to equals(Object)

  andreasprlic

  committed
  7587b03

  Copy full SHA for 7587b03

• adding a sequence.equals(Sequence) and hashCode class to sequences.

  valasatava

  committed
  f4c9b69

  Copy full SHA for f4c9b69

Commits on Feb 8, 2017

• Merge branch 'upstream_master'

  emckee2006

  committed
  3b3354e

  Copy full SHA for 3b3354e

• Add in previously missed protein aliases...

  emckee2006

  committed
  246525b

  Copy full SHA for 246525b

Commits on Nov 9, 2016

• Fix #596. Remove test for GenBank identifier parsing

  Show description for 837dc63
  sbliven

  committed
  837dc63

  Copy full SHA for 837dc63

Commits on Sep 14, 2016

• Also get short name when getting other protein aliases

  emckee2006

  committed
  9b0d208

  Copy full SHA for 9b0d208

Commits on Aug 25, 2016

• Merge branch 'pr/44'

  Show description for c819e5a
  emckee2006

  committed
  c819e5a

  Copy full SHA for c819e5a

• add ability to pull gene and protein aliases from uniprot

  emckee2006

  committed
  6c6cdaa

  Copy full SHA for 6c6cdaa

Commits on Aug 23, 2016

• Merge pull request #555 from andreasprlic/master

  Show description for 715fce4
  sbliven

  authored
  715fce4

  Copy full SHA for 715fce4

Commits on Aug 21, 2016

• GenericInsdcHeaderFormat: Fixed formatting codes.

  andviane

  committed
  4ee01d4

  Copy full SHA for 4ee01d4

Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

  committed
  56e81e6

  Copy full SHA for 56e81e6

• setting default log level to warn

  andreasprlic

  committed
  07f244a

  Copy full SHA for 07f244a

• making output less verbose

  andreasprlic

  committed
  285583d

  Copy full SHA for 285583d

Commits on Aug 16, 2016

• updating to latest version of Cobertura tests. Now can successfully run locally.

  andreasprlic

  committed
  fbf294c

  Copy full SHA for fbf294c

Commits on Jul 4, 2016

• Merge pull request #525 from andreasprlic/master

  Show description for 2fca095
  josemduarte

  authored
  2fca095

  Copy full SHA for 2fca095

• Merge pull request #519 from DevFactory/release--inefficient-string-buffering-fix-1

  Show description for 35deefe
  josemduarte

  authored
  35deefe

  Copy full SHA for 35deefe

Commits on Jul 1, 2016

• Cleanup - squid:S1858 - "toString()" should never be called on a String object

  

  Mohamed Ezzat

  committed
  082d860

  Copy full SHA for 082d860

• pmd:InefficientStringBuffering - Inefficient String Buffering

  

  Mohamed Ezzat

  committed
  da3b8e8

  Copy full SHA for da3b8e8

Commits on Jun 30, 2016

• #505 switching to https for all NCBI utils traffic.

  andreasprlic

  committed
  c013771

  Copy full SHA for c013771

• #505 switching to https for all NCBI utils traffic.

  andreasprlic

  committed
  0175104

  Copy full SHA for 0175104

Commits on Jun 27, 2016

• Normalize percentage of identity by the length without gaps #521

  lafita

  committed
  3722ce5

  Copy full SHA for 3722ce5