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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -27,6 +27,7 @@ A tutorial for the protein structure modules of [BioJava](http://www.biojava.org
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2828This tutorial is split into several chapters.
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3031Chapter 1 - Quick [ Installation] ( installation.md )
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3233Chapter 2 - [ First Steps] ( firststeps.md )
@@ -47,13 +48,18 @@ Chapter 9 - [Biological Assemblies](bioassembly.md)
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4849Chapter 10 - [ External Databases] ( externaldb.md ) like SCOP & ; CATH
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50- Chapter 11 - Protein Symmetry
51+ Chapter 11 - [ Contacts within a chain and between chains] ( contact-map.md )
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53+ Chapter 12 - Finding all interfaces in crystal: [ crystal contacts] ( crystal-contacts.md )
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55+ Chapter 13 - Protein Symmetry
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57+ Chapter 14 - Bonds
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52- Chapter 12 - Bonds
59+ Chapter 15 - [ Special Cases ] ( special.md )
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54- Chapter 13 - [ Special Cases ] ( special .md)
61+ Chapter 16 - [ Lists ] ( lists.md ) of PDB IDs and PDB [ status information ] ( lists .md) .
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56- Chapter 14 - [ Lists] ( lists.md ) of PDB IDs and PDB [ status information] ( lists.md ) .
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5864### Author:
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