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Merge pull request statsmodels#9092 from bashtage/backport-0.14.1
Backport 0.14.1
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‎.github/workflows/codeql.yml‎

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steps:
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- name: Checkout repository
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uses: actions/checkout@v3
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uses: actions/checkout@v4
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# Initializes the CodeQL tools for scanning.
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- name: Initialize CodeQL

‎.github/workflows/generate-documentation.yml‎

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python-version: ["3.10"]
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steps:
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- name: Checkout
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uses: actions/checkout@v3
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uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Checkout statsmodels.github.io without token
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uses: actions/checkout@v3
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uses: actions/checkout@v4
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with:
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fetch-depth: 1
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repository: statsmodels/statsmodels.github.io
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path: statsmodels.github.io
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if: ${{ github.event_name == 'pull_request' }}
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- name: Checkout statsmodels.github.io with token
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uses: actions/checkout@v3
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uses: actions/checkout@v4
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with:
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fetch-depth: 1
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repository: statsmodels/statsmodels.github.io
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- name: Install graphviz
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uses: ts-graphviz/setup-graphviz@v1
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v4
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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cache: "pip"

‎.gitignore‎

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#setuptools-scm generated version file
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statsmodels/_version.py
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# generated c source and built extensions
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# Generated c source and built extensions
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# and Byte-compiled / optimized / DLL files
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*.c
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*.so
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*.pyd
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*.py[cod]
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__pycache__/
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# repository directories for bzr-git
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.bzr
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# Temporary copies for packaging
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statsmodels/setup.cfg
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statsmodels/LICENSE.txt
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# Dataset downloads
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statsmodels/datasets/tests/*.zip

‎INSTALL.txt‎

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patsy.readthedocs.org
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cython >= 0.29.26
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cython >= 0.29.33 and < 4.0.0
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https://cython.org/
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‎azure-pipelines.yml‎

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VML_NUM_THREADS: 1
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OPENBLAS_NUM_THREADS: 1
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PYTHONHASHSEED: 0 # Ensure tests are correctly gathered by xdist
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SETUPTOOLS_USE_DISTUTILS: "stdlib"
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USE_MATPLOTLIB: true
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jobs:

‎docs/source/install.rst‎

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Cython is required to build from a git checkout but not to run or install from PyPI:
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* `Cython <https://cython.org/>`__ >= 0.29.26 is required to build the code from
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* `Cython <https://cython.org/>`__ >= 0.29.33 is required to build the code from
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github but not from a source distribution.
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Given the long release cycle, statsmodels follows a loose time-based policy for

‎pyproject.toml‎

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# These are strictly build requirements. Runtime requirements are listed in
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# INSTALL_REQUIRES in setup.py
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requires = [
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"setuptools>=59.2.0",
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"cython>=0.29.26,<3", # Sync with CYTHON_MIN_VER in setup
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"setuptools>=69.0.2; python_version>='3.12'",
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"setuptools>=63.4.3",
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"cython>=0.29.33,<4", # Sync with CYTHON_MIN_VER in setup
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# Workaround for oldest supported numpy using 1.21.6, but SciPy 1.9.2+ requiring 1.22.3+
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"oldest-supported-numpy; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
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"numpy>=1.22.3,<2; python_version=='3.10' and platform_system=='Windows' and platform_python_implementation != 'PyPy'",
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"numpy<2; python_version>='3.12'",
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"scipy>=1.4",
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"setuptools_scm[toml]>=7,<8"
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"setuptools_scm[toml]>=8,<9"
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]
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build-backend = "setuptools.build_meta"
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‎requirements-dev.txt‎

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# build
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cython>=0.29.28,<3.0.0
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setuptools_scm[toml]~=7.0
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cython>=0.29.33,<4.0.0
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setuptools_scm[toml]~=8.0
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oldest-supported-numpy>=2022.4.18
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# run
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pytest>=7.3.0
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pytest-randomly
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pytest-xdist
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pytest-cov
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# Pin on Win32
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pywinpty; os_name == "nt"

‎requirements.txt‎

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scipy>=1.4,!=1.9.2 # released December 2019
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scipy>=1.4,!=1.9.2; sys_platform == "win32" # Blocked 1.9.2 due to Windows issues
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pandas>=1.0,!=2.1.0 # released January 2020, 2.1.0 blocked due to bug
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patsy>=0.5.2 # released January 2018
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patsy>=0.5.4 # released January 2018
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packaging>=21.3 # released Nov 2021

‎setup.cfg‎

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ignore:The --strict option is deprecated:pytest.PytestDeprecationWarning:
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error:genfromdta:FutureWarning
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error:StataReader:FutureWarning
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error:Estimation of VARMA:statsmodels.tools.sm_exceptions.EstimationWarning
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error:Care should be used:UserWarning
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error::statsmodels.tools.sm_exceptions.HypothesisTestWarning
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error::statsmodels.tools.sm_exceptions.SpecificationWarning
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error:A value is trying to be set on a copy::
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error:Conversion of an array with ndim:DeprecationWarning:
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error:Series.__getitem__ treating keys:FutureWarning:
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error:'Y' is deprecated, please use 'YE' instead:FutureWarning
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error:'A' is deprecated, please use 'YE' instead:FutureWarning
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error:'H' is deprecated and will:FutureWarning
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error:'M' is deprecated, please use:FutureWarning
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error:'Q' is deprecated, please use 'QE' instead:FutureWarning
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error:'Q-DEC' is deprecated, please use 'QE-DEC' instead:FutureWarning
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error:'Q-JAN' is deprecated, please use 'QE-JAN' instead:FutureWarning
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error:'BQ-MAR' is deprecated, please use 'BQE-MAR' instead:FutureWarning
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error:'AS-MAR' is deprecated and will be removed in a future version:FutureWarning
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error:Downcasting object dtype arrays on:FutureWarning
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error:The previous implementation of stack is deprecated:FutureWarning
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error:Series.__setitem__ treating keys as positions is deprecated:FutureWarning
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error:The provided callable:FutureWarning
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error:divide by zero encountered in log1p:RuntimeWarning
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markers =
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example: mark a test that runs example code
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matplotlib: mark a test that requires matplotlib

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