--- title: Algorithm Java port --- Possible Java ports of Algorithms ================================= We would be interested in having Java ports of the following algorithms: `- Blast` `- Hmmer3` `- Dssp (some parts already available)` ### Couple of tools that might be useful for porting to Java This software is available for $119 with a 15 day return. It won't do perfect code but will get you close. This is also an interesting approach where I can't imagine would work in a I/O or computationally intensive application. Converting ASM to Bytecode takes out all the parsing headaches. The JIT should still be able to take over and optimize. I have used this before and works reasonably well. You get a Jar file that maps all the ansi C libraries.