/* How do I make a custom Alphabet from custom Symbols? */

markjschreiber · andreasprlic · commit 2579784e6ddc · 2016-04-09T10:57:49.000-07:00
diff --git a/_wikis/BioJava:Cookbook:Alphabets:Custom.md b/_wikis/BioJava:Cookbook:Alphabets:Custom.md
@@ -7,15 +7,15 @@ How do I make a custom Alphabet from custom Symbols?
 
 This example demonstrates the creation of a 'binary' alphabet that will
 have two
-[Symbols](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html),
+[Symbols](http://www.biojava.org/docs/api15/org/biojava/bio/symbol/Symbol.html),
 zero and one. The custom made
-[Symbols](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html)
+[Symbols](http://www.biojava.org/docs/api15/org/biojava/bio/symbol/Symbol.html)
 and
-[Alphabet](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Alphabet.html)
+[Alphabet](http://www.biojava.org/docs/api15/org/biojava/bio/symbol/Alphabet.html)
 can then be used to make
-[SymbolList](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/SymbolList.html),
-[Sequences](http://www.biojava.org/docs/api14/org/biojava/bio/seq/Sequence.html),
-[Distributions](http://www.biojava.org/docs/api14/org/biojava/bio/dist/Distribution.html),
+[SymbolList](http://www.biojava.org/docs/api15/org/biojava/bio/symbol/SymbolList.html),
+[Sequences](http://www.biojava.org/docs/api15/org/biojava/bio/seq/Sequence.html),
+[Distributions](http://www.biojava.org/docs/api15/org/biojava/bio/dist/Distribution.html),
 etc.
 
 <java> import org.biojava.bio.symbol.\*; import org.biojava.bio.\*;
@@ -46,7 +46,7 @@ public class Binary {
 `&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;System.out.println(sym.getName());`  
 `&nbsp;&nbsp;&nbsp;}`
 
-`&nbsp;&nbsp;&nbsp;//it&nbsp;is&nbsp;usual&nbsp;to&nbsp;register&nbsp;newly&nbsp;creates&nbsp;Alphabets&nbsp;with&nbsp;the&nbsp;AlphabetManager`  
+`&nbsp;&nbsp;&nbsp;//it&nbsp;is&nbsp;usual&nbsp;to&nbsp;register&nbsp;newly&nbsp;created&nbsp;Alphabets&nbsp;with&nbsp;the&nbsp;AlphabetManager`  
 `&nbsp;&nbsp;&nbsp;AlphabetManager.registerAlphabet(binary.getName(),&nbsp;binary);`
 
 `&nbsp;&nbsp;&nbsp;/*`  
diff --git a/_wikis/BioJava:Cookbook:Alphabets:Custom.mediawiki b/_wikis/BioJava:Cookbook:Alphabets:Custom.mediawiki
@@ -1,6 +1,6 @@
 == How do I make a custom Alphabet from custom Symbols? ==
 
-This example demonstrates the creation of a 'binary' alphabet that will have two [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html Symbols], zero and one. The custom made [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html Symbols] and [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Alphabet.html Alphabet] can then be used to make [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/SymbolList.html SymbolList], [http://www.biojava.org/docs/api14/org/biojava/bio/seq/Sequence.html Sequences], [http://www.biojava.org/docs/api14/org/biojava/bio/dist/Distribution.html Distributions], etc.
+This example demonstrates the creation of a 'binary' alphabet that will have two [http://www.biojava.org/docs/api15/org/biojava/bio/symbol/Symbol.html Symbols], zero and one. The custom made [http://www.biojava.org/docs/api15/org/biojava/bio/symbol/Symbol.html Symbols] and [http://www.biojava.org/docs/api15/org/biojava/bio/symbol/Alphabet.html Alphabet] can then be used to make [http://www.biojava.org/docs/api15/org/biojava/bio/symbol/SymbolList.html SymbolList], [http://www.biojava.org/docs/api15/org/biojava/bio/seq/Sequence.html Sequences], [http://www.biojava.org/docs/api15/org/biojava/bio/dist/Distribution.html Distributions], etc.
 
 <java>
 import org.biojava.bio.symbol.*;
@@ -31,7 +31,7 @@ public class Binary {
       System.out.println(sym.getName());
     }
 
-    //it is usual to register newly creates Alphabets with the AlphabetManager
+    //it is usual to register newly created Alphabets with the AlphabetManager
     AlphabetManager.registerAlphabet(binary.getName(), binary);
 
     /*
