biojava-ffx org.biojava 4.1.1-SNAPSHOT 4.0.0 biojava-aa-prop-ffx biojava-aa-prop-ffx http://www.biojava.org org.apache.maven.plugins maven-compiler-plugin demo/**.java org.apache.maven.plugins maven-assembly-plugin AAProperties true org.biojava.nbio.aaproperties.CommandPrompt jar-with-dependencies ${project.basedir}/src true make-assembly package single org.biojava biojava-core-ffx 4.1.1-SNAPSHOT org.biojava biojava-structure-ffx 4.1.1-SNAPSHOT org.slf4j slf4j-api org.apache.logging.log4j log4j-slf4j-impl org.apache.logging.log4j log4j-api org.apache.logging.log4j log4j-core junit junit test