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base repository: biojava/biojava
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base: biojava-4.2.5
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head repository: biojava/biojava
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compare: biojava-4.2.6
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  • 11 commits
  • 27 files changed
  • 5 contributors

Commits on Dec 7, 2016

  1. [maven-release-plugin]prepare for next development iteration

    Jenkins committed Dec 7, 2016
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Commits on Jan 21, 2017

  1. New test to demonstrate issue with cloning

    @josemduarte
    josemduarte committed Jan 21, 2017
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  2. Fix for #631

    @josemduarte
    josemduarte committed Jan 21, 2017
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  3. Better logging in symmetry package

    @josemduarte
    josemduarte committed Jan 21, 2017
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  4. Less verbose logging in AsaCalculator

    @josemduarte
    josemduarte committed Jan 21, 2017
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  5. Now catching empty arrays in getCentroid

    @josemduarte
    josemduarte committed Jan 21, 2017
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Commits on Feb 10, 2017

  1. Better rules for Quaternary symm self-alignments 

    Don't allow subunits to be aligned to themselves (except for the
identity alignment).
    @sbliven
    sbliven committed Feb 10, 2017
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Commits on Feb 15, 2017

  1. Fix Quaternary symmetry symmetry detection bug 

    In special cases it was possible to have pairs of axes that
pass our quality thresholds but form invalid symmetry groups.

Now alignments that superimpose a subunit onto itself are forbidden,
which should restrict it to the chiral groups.

Also add numerous notes and documentation.
    @sbliven
    sbliven committed Feb 15, 2017
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  2. Merge pull request #634 from sbliven/bugfixes-4.2 

    Fix Quaternary symmetry symmetry detection bug
    @sbliven
    sbliven authored Feb 15, 2017
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Commits on Feb 18, 2017

  1. Catching empty coordinates earlier in quat sym detection

    @josemduarte
    josemduarte committed Feb 18, 2017
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  2. [maven-release-plugin]prepare release biojava-4.2.6

    Jenkins committed Feb 18, 2017
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