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onbiojava-7.1.4

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Commits on Jan 7, 2025

• Javadoc fix: remaining errors in structure module. Mostly obsolete references

  josemduarte

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• Javadoc fix: most other errors in structure module

  josemduarte

  committed
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Commits on Jul 22, 2024

• Removing functionality that uses mmtf.rcsb.org, now deprecated

  josemduarte

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Commits on Apr 18, 2024

• Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

  jlerbsc

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Commits on Feb 26, 2024

• fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

  jlerbsc

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Commits on Apr 8, 2021

• Removing utility method that shouldn't be here

  josemduarte

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Commits on Jan 27, 2021

• docs

  sbittrich

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Commits on Jan 26, 2021

• Merge remote-tracking branch 'upstream/master' into bcif-integration

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  sbittrich

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Commits on Jan 25, 2021

• new filetype param

  sbittrich

  committed
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Commits on Jan 20, 2021

• compiling

  sbittrich

  committed
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Commits on Jan 14, 2021

• wip (TODO chemcomp parsing)

  sbittrich

  committed
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Commits on Jan 13, 2021

• wip (most of structure parsing done)

  sbittrich

  committed
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Commits on Nov 3, 2020

• Removing DSSPParser.fetch after RCSB deprecation

  josemduarte

  committed
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Commits on Jan 3, 2019

• Automatically convert spaces to tabs

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  sbliven

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• Remove trailing spaces from java files

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  sbliven

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Commits on Mar 14, 2018

• Add license to all files

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  sbliven

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Commits on Jan 19, 2018

• Small refactoring for more flexible symmetry detection.

  

  Dmytro Guzenko

  committed
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Commits on Dec 7, 2017

• New demo for mmcif to pdb conversion

  josemduarte

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Commits on Oct 9, 2017

• A fix for #708

  josemduarte

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Commits on Oct 5, 2017

• A new dome for quat symmetry detection

  josemduarte

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Commits on Oct 4, 2017

• New bioassembly demo

  josemduarte

  committed
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Commits on Jul 25, 2016

• Implement test for QsAlign algorithm

  lafita

  committed
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Commits on Jul 21, 2016

• Complete the QsAlign algorithm

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  lafita

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Commits on Jul 1, 2016

• now printing author chain ID

  andreasprlic

  committed
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Commits on Jun 17, 2016

• adding biojava's internal sec struc assignment to example

  andreasprlic

  committed
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Commits on Jun 7, 2016

• Refactored getChain(int chainIndex) and getChain(int modelNr, int chainIndex) to getChainByIndex().

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  abradle

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Commits on May 19, 2016

• Now getting mmSize from num operators and chains.

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  josemduarte

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• Fixed a bug in reconstructing the bioassembly from pdb format.

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  josemduarte

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Commits on May 12, 2016

• Reverting getPolyChainsByPDB, keeping getNonPolyChainsByPDB

  josemduarte

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Commits on May 11, 2016

• changing get*ChainByPDB methods signature to return List<Chain>

  andreasprlic

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Commits on May 10, 2016

• Important bug fixes and docs in Structure/StructureImpl.

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  josemduarte

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Commits on Apr 20, 2016

• Some refactoring and docs

  josemduarte

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Commits on Apr 19, 2016

• Additional testing of the reader and writer.

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  abradle

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• Refactored function names in MMTFActions

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  abradle

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Commits on Apr 12, 2016

• Updates to Biojava to remove any mention of the Messagepack serializer /deserializer

  abradle

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