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Commits on Jan 8, 2025

• Merge pull request #1103 from josemduarte/cifparser-gemmifile

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Commits on Jan 7, 2025

• Javadoc fix: remaining errors in structure module. Mostly obsolete references

  josemduarte

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• Javadoc fix: most other errors in structure module

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• Javadoc fix: many errors in struct align package

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• Javadoc fix: many errors in struct align package

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Commits on Jan 6, 2025

• Javadoc fix: many errors in struct align package

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• More lenient parsing if some fields are missing (e.g. in files output by Gemmi)

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Commits on Jan 4, 2025

• Javadoc fix: some more errors from structure module

  josemduarte

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Commits on Jan 3, 2025

• Javadoc fix: some more errors from structure module

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• Javadoc fix: a few errors from structure module

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Commits on Aug 30, 2024

• Add additional error checks to QuatSymmetry functions

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• Fix CE-Symm bug relating to short subunits.

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• Fix some typos

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Commits on Aug 9, 2024

• Merge pull request #1098 from josemduarte/issue1096

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Commits on Jul 22, 2024

• Removing functionality that uses mmtf.rcsb.org, now deprecated

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Commits on Jul 19, 2024

• Bringing back alignPairs option, should fix #1096

  josemduarte

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• Some cleanups

  josemduarte

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Commits on Jun 12, 2024

• Fix issue s1319 Declarations should use Java collection interfaces on biojava-core and dependencies

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Commits on Apr 18, 2024

• Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

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Commits on Mar 6, 2024

• Merge pull request #1086 from jlerbsc/master

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• Merge pull request #1085 from josemduarte/miscfixes

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Commits on Mar 5, 2024

• fix sonar issue 2629 Logging arguments should not require evaluation

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Commits on Mar 4, 2024

• Merge pull request #1083 from josemduarte/parseEsmCifFix

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• Replacing home-made copy by Files.copy. Other minor fixes

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Commits on Mar 2, 2024

• Better with ternary if

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• Be more lenient with some missing atom_site fields

  josemduarte

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Commits on Feb 26, 2024

• fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

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Commits on Jan 8, 2024

• Changed the URLs to the mirrors from http to https. Changed the name of the URL path to reflect a change in the v2 naming.

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Commits on Dec 29, 2023

• Updated to Jakarta JAXB and Java 17

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Commits on Jun 30, 2023

• Merge remote-tracking branch 'origin/master'

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• Try-with from sonar

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Commits on Jun 27, 2023

• Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

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Commits on Jun 21, 2023

• Second fix for sonar rule 's1130' throws declarations should not be superfluous. This fix is specific to constructor declarations.

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Commits on Jun 2, 2023

• Cleanup

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Commits on Jun 1, 2023

• Merge pull request #1062 from jlerbsc/master

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