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onbiojava-7.1.2

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Commits on May 15, 2024

• Fix issue s1319 Declarations should use Java collection interfaces on biojava-core

  jlerbsc

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Commits on Apr 18, 2024

• Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

  jlerbsc

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Commits on Mar 5, 2024

• fix sonar issue 2629 Logging arguments should not require evaluation

  jlerbsc

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Commits on Feb 26, 2024

• fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

  jlerbsc

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Commits on Jun 30, 2023

• Merge remote-tracking branch 'origin/master'

  josemduarte

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• Try-with from sonar

  josemduarte

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• Try-with from sonar and main cleanup

  josemduarte

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Commits on Jun 27, 2023

• Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

  jlerbsc

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Commits on May 7, 2023

• Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

  

  Pavan Kumar, Thummuru

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Commits on Apr 16, 2023

• Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

  tmrpavan

  committed
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Commits on Feb 1, 2022

• Removing a utility tool that was really internal to biojava, but that was using external resources that are now gone.

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  josemduarte

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Commits on Feb 22, 2021

• Add copy constructor to FastqBuilder.

  heuermh

  committed
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• Collect to ArrayList rather than LinkedList.

  heuermh

  committed
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Commits on Sep 17, 2020

• Remove unused import

  jean-philippe-martin

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• Add Javadoc to the overload

  jean-philippe-martin

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• Add GFF3Reader overload that accepts Path

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  jean-philippe-martin

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Commits on Apr 30, 2020

• Fixed impact of refactoring on genome module

  paolopavan

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Commits on Jan 3, 2019

• Manually fix cases of space indentation identation found by

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  sbliven

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• Automatically convert spaces to tabs

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  sbliven

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• Remove trailing spaces from java files

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  sbliven

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Commits on Jan 2, 2019

• Merge branch 'bugfixes-4.2'

  sbliven

  committed
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Commits on Mar 14, 2018

• Merge pull request #749 from josemduarte/removeV4deprecations

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  josemduarte

  authored
  763f7ec

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• Add license to all files

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  sbliven

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Commits on Mar 12, 2018

• Removing deprecations from v4

  josemduarte

  committed
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Commits on Mar 9, 2018

• Added moved note and cleaned up unused variable and some docs

  josemduarte

  committed
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Commits on Mar 7, 2018

• Merging sequencing module into genome module as per #536

  josemduarte

  committed
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Commits on Oct 3, 2017

• Updating genenames.org url to https

  josemduarte

  committed
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• Updating genenames.org url to https

  josemduarte

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Commits on Aug 15, 2017

• improvements

  valasatava

  committed
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• Setter for chromosome coordinate systems: 0-based, 1-based

  valasatava

  committed
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• CDS length calculation bug fix

  valasatava

  committed
  033d92e

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Commits on Apr 11, 2017

• Merge branch 'master' of https://github.com/valasatava/biojava

  valasatava

  committed
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Commits on Apr 7, 2017

• Work with assemble hg19 or hg37 keyword

  valasatava

  committed
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• Get CDS ranges patch

  valasatava

  committed
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Commits on Apr 5, 2017

• Get CDS ranges patch

  valasatava

  committed
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