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onbiojava-5.2.0

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Commits on Jan 3, 2019

• Manually fix cases of space indentation identation found by

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  sbliven

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• Automatically convert spaces to tabs

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  sbliven

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• Remove trailing spaces from java files

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  sbliven

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Commits on Jan 2, 2019

• Fix compilation errors from merge

  sbliven

  committed
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• Merge branch 'bugfixes-4.2'

  sbliven

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Commits on Dec 14, 2018

• added implementation of method parameter

  

  Dylan Yerly

  committed
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Commits on Sep 7, 2018

• Make BioJava compile under java9

  

  sbliven

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  josemduarte

  committed
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Commits on Jul 2, 2018

• Uniprot has switched to https

  josemduarte

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Commits on Jun 27, 2018

• Fix NonstandardProteinCompoundTest failure

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  sbliven

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Commits on May 11, 2018

• Merge pull request #769 from MaxGreil/ABITracer

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  josemduarte

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• Converting some old loggers to slf4j. Clean up.

  josemduarte

  committed
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Commits on May 7, 2018

• Fixed minor issues

  MaxGreil

  committed
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• Using slf4j logger instead of java logging

  josemduarte

  committed
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• Code reviewer requests

  MaxGreil

  committed
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Commits on May 6, 2018

• New ABITracer class with ABITracerTest and new ABITracerCompoundSet

  MaxGreil

  committed
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• Tests ABITracerTest now running

  MaxGreil

  committed
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Commits on May 5, 2018

• ABITracer Constructor with URL

  MaxGreil

  committed
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• First commit for ABITracer

  MaxGreil

  committed
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Commits on Mar 14, 2018

• Merge pull request #749 from josemduarte/removeV4deprecations

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  josemduarte

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• Add license to all files

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  sbliven

  committed
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Commits on Mar 12, 2018

• Removing deprecations from v4

  josemduarte

  committed
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Commits on Mar 7, 2018

• Warnings cleanup

  josemduarte

  committed
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Commits on Feb 20, 2018

• Merge pull request #713 from noureddine-mb/emblParser

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  sbliven

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Commits on Jan 30, 2018

• Merge pull request #718 from zweibieren/master

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  josemduarte

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Commits on Jan 23, 2018

• Added comments/docs following the review.

  

  Dmytro Guzenko

  committed
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Commits on Jan 19, 2018

• Small refactoring for more flexible symmetry detection.

  

  Dmytro Guzenko

  committed
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Commits on Jan 9, 2018

• Update UncompressInputStream.java

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  zweibieren

  authored
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• Update UncompressInputStream.java

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  zweibieren

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• Update UncompressInputStream.java

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  zweibieren

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Commits on Dec 12, 2017

• Revert to old behavior where process(int) return null on end-of-file.

  

  arojnuckarin

  authored and

  josemduarte

  committed
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• Attempt to fix issue #659 - Error parsing FASTA in multiple passes

  

  arojnuckarin

  authored and

  josemduarte

  committed
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Commits on Dec 5, 2017

• insert license header

  NoorAldeenMB

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Commits on Dec 4, 2017

• using resource loader in testing.

  NoorAldeenMB

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Commits on Dec 3, 2017

• Embl changes

  NoorAldeenMB

  committed
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• Embl Changes

  NoorAldeenMB

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